Command line training


  The GenoToul bioinformatics platform, Sigenae, NED (GenPhySE), SaAB (MIAT) and TWB offers a catalog of training sessions. If you need bio-informatic training on tools which are not covered in the existing catalog please feel free to contact us (please add “Request for training” in the subject of your demand). For example we have supports for a training presenting, sequence alignment, tree construction to define subfamilies and patterns or profiles detection in sequences. To get all administrative information have a look at the pricing page. If you need administrative help please contact: Alain.Perault(at)

All training given by bioinformatics core facilities are available at Institut Français de Bionformatique (IFB) or can be referenced at SFBI – formation.

The training material are in English but the training will be delivered in French. Some courses are available on the Sigenae e-learning Platform (please connect with your genotoul LDAP login/password. If necessary, ask for a LDAP account here).

Événement Date / Heure Organizers Vacancies Registration
Methods for phylogenetic trees construction - H. Chiapello - -
Phylogenomics and selection pressure - C. Hoede - -
Sequences alignment and phylogeny - G. Pascal - -
sRNAseq - J. Mariette - -
Read alignment and small size variants calling - P. Bardou, S. Rodriguez - -
RNAseq alignment and transcripts assemblies with statistics - C. Cabau, C. Gaspin, C. Hoede, S. Maman, C. Noirot, N. Villa-Vialaneix, M. Zytnicky - -
RNAseq de novo assembly - C. Klopp, C.Cabau - -
Linux 12/11/2018
9 h 00 - 17 h 00
D.Laborie, A.Perault 3 Register now
Cluster 13/11/2018
9 h 00 - 17 h 00
D.Laborie, A. Perault 2 Register now
RNAseq alignment and transcripts assemblies 14/11/2018 - 15/11/2018
9 h 00 - 12 h 30
C. Gaspin, C. Hoede, C. Noirot, M. Zytnicky 2 Register now