Command line training


  The GenoToul bioinformatics platform, Sigenae, NED (GenPhySE), SaAB (MIAT) and TWB offers a catalog of training sessions. If you need bio-informatic training on tools which are not covered in the existing catalog please feel free to contact us (please add “Request for training” in the subject of your demand). For example we have supports for a training presenting, sequence alignment, tree construction to define subfamilies and patterns or profiles detection in sequences. To get all administrative information have a look at the pricing page. If you need administrative help please contact: Alain.Perault(at)

All training given by bioinformatics core facilities are available at Institut Français de Bionformatique (IFB) or can be referenced at SFBI – formation.

The training material are in English but the training will be delivered in French. Some courses are available on the Sigenae e-learning Platform (please connect with your genotoul LDAP login/password. If necessary, ask for a LDAP account here).

Événement Date / Heure Organizers Vacancies Registration
Methods for phylogenetic trees construction - H. Chiapello - -
Phylogenomics and selection pressure - C. Hoede - -
Sequences alignment and phylogeny - G. Pascal - -
sRNAseq - J. Mariette - -
Read alignment and small size variants calling - P. Bardou, S. Rodriguez - -
RNAseq alignment, quantification and transcript discovery with statistics - C. Cabau, C. Gaspin, C. Hoede, S. Maman, C. Noirot, N. Villa-Vialaneix, M. Zytnicky - -
RNAseq alignment, quantification and transcripts discovery - C. Gaspin, C. Hoede, C. Noirot, M. Zytnicky - -
RNAseq de novo assembly 12/02/2019
9 h 00 - 17 h 00
C. Klopp, C.Cabau
Genotoul/MIAT and Sigenae
9 Register now
Linux 11/03/2019
9 h 00 - 17 h 00
D.Laborie, A.Perault 9 Register now
Cluster 12/03/2019
9 h 00 - 17 h 00
D.Laborie, A. Perault 9 Register now
Modify and extract information from large text files 13/03/2019
9 h 00 - 17 h 00
C. Klopp, A. Perault, C. Gaspin 10 Register now

To subscribe into a waiting list or if you need one of our training to be scheduled please send an email to Alain.Perault(at)