Publications 2023

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure / Funding / Staff members). All Sigenae’s publications have used the GenoToul Bioinformatics hardware infrastructure.

(1) Eché, C.; Iampietro, C.; Birbes, C.; Dréau, A.; Kuchly, C.; Di Franco, A.; Klopp, C.; Faraut, T.; Djebali, S.; Castinel, A.; Zytnicki, M.; Denis, E.; Boussaha, M.; Grohs, C.; Boichard, D.; Gaspin, C.; Milan, D.; Donnadieu, C. A Bos Taurus Sequencing Methods Benchmark for Assembly, Haplotyping, and Variant Calling. Sci Data 2023, 10 (1), 369.
(2) Ranchou-Peyruse, M.; Guignard, M.; Haddad, P. G.; Robin, S.; Boesch, F.; Lanot, M.; Carrier, H.; Dequidt, D.; Chiquet, P.; Caumette, G.; Cézac, P.; Ranchou-Peyruse, A. A Deep Continental Aquifer Downhole Sampler for Microbiological Studies. Front. Microbiol. 2023, 13, 1012400.
(3) Krasovec, M.; Merret, R.; Sanchez, F.; Sanchez-Brosseau, S.; Piganeau, G. A High Frequency of Chromosomal Duplications in Unicellular Algae Is Compensated by Translational Regulation. Genome Biology and Evolution 2023, 15 (6), evad086.
(4) Rice, E. S.; Alberdi, A.; Alfieri, J.; Athrey, G.; Balacco, J. R.; Bardou, P.; Blackmon, H.; Charles, M.; Cheng, H. H.; Fedrigo, O.; Fiddaman, S. R.; Formenti, G.; Frantz, L. A. F.; Gilbert, M. T. P.; Hearn, C. J.; Jarvis, E. D.; Klopp, C.; Marcos, S.; Mason, A. S.; Velez-Irizarry, D.; Xu, L.; Warren, W. C. A Pangenome Graph Reference of 30 Chicken Genomes Allows Genotyping of Large and Complex Structural Variants. BMC Biol 2023, 21 (1), 267.
(5) Baudrin, G.; Pons, J.-M.; Bed’Hom, B.; Gil, L.; Boyer, R.; Dusabyinema, Y.; Jiguet, F.; Fuchs, J. A Reference Genome Assembly for the Spotted Flycatcher ( Muscicapa Striata ). Genome Biology and Evolution 2023, 15 (8), evad140.
(6) Doin de Moura, G. G.; Mouffok, S.; Gaudu, N.; Cazalé, A.-C.; Milhes, M.; Bulach, T.; Valière, S.; Roche, D.; Ferdy, J.-B.; Masson-Boivin, C.; Capela, D.; Remigi, P. A Selective Bottleneck During Host Entry Drives the Evolution of New Legume Symbionts. Molecular Biology and Evolution 2023, 40 (5), msad116.
(7) Maigné, É.; Noirot, C.; Henry, J.; Adu Kesewaah, Y.; Badin, L.; Déjean, S.; Guilmineau, C.; Krebs, A.; Mathevet, F.; Segalini, A.; Thomassin, L.; Colongo, D.; Gaspin, C.; Liaubet, L.; Vialaneix, N. Asterics: A Simple Tool for the ExploRation and Integration of OmiCS Data. BMC Bioinformatics 2023, 24 (1), 391.
(8) Laroche, E.; Joulian, C.; Duee, C.; Casiot, C.; Héry, M.; Battaglia-Brunet, F. Bio-Precipitation of Arsenic and Antimony in a Sulfate-Reducing Bioreactor Treating Real Acid Mine Drainage Water. FEMS Microbiology Ecology 2023, 99 (8), fiad075.
(9) Wen, M.; Pan, Q.; Larson, W.; Eché, C.; Guiguen, Y. Characterization of the Sex Determining Region of Channel Catfish (Ictalurus Punctatus) and Development of a Sex-Genotyping Test. Gene 2023, 850, 146933.
(10) Doniol‐Valcroze, P.; Rancilhac, L.; Brito, J.; Miralles, A.; Geniez, P.; Benoit, L.; Loiseau, A.; Leblois, R.; Dufresnes, C.; Crochet, P. Combining RADseq and Contact Zone Analysis to Decipher Cryptic Diversification in Reptiles: Insights from the Spiny‐footed Lizard (Reptilia, Lacertidae). Zoologica Scripta 2024, 53 (1), 1–15.
(11) Poullet, N.; Devarieux, O.; Beramice, D.; Dantec, L.; Félicité, Y.; Feuillet, D.; Gourdine, J.-L.; Bambou, J.-C. Comparative Analysis of Whole Blood Transcriptomics between European and Local Caribbean Pigs in Response to Feed Restriction in a Tropical Climate. BMC Genomics 2023, 24 (1), 292.
(12) Libourel, C.; Keller, J.; Brichet, L.; Cazalé, A.-C.; Carrère, S.; Vernié, T.; Couzigou, J.-M.; Callot, C.; Dufau, I.; Cauet, S.; Marande, W.; Bulach, T.; Suin, A.; Masson-Boivin, C.; Remigi, P.; Delaux, P.-M.; Capela, D. Comparative Phylotranscriptomics Reveals Ancestral and Derived Root Nodule Symbiosis Programmes. Nat. Plants 2023, 9 (7), 1067–1080.
(13) Danguy des Déserts, A.; Durand, N.; Servin, B.; Goudemand-Dugué, E.; Alliot, J.-M.; Ruiz, D.; Charmet, G.; Elsen, J.-M.; Bouchet, S. Comparison of Genomic-Enabled Cross Selection Criteria for the Improvement of Inbred Line Breeding Populations. G3: Genes, Genomes, Genetics 2023, 13 (11), jkad195.
(14) Courtot, É.; Boisseau, M.; Dhorne-Pollet, S.; Serreau, D.; Gesbert, A.; Reigner, F.; Basiaga, M.; Kuzmina, T.; Lluch, J.; Annonay, G.; Kuchly, C.; Diekmann, I.; Krücken, J.; von Samson-Himmelstjerna, G.; Mach, N.; Sallé, G. Comparison of Two Molecular Barcodes for the Study of Equine Strongylid Communities with Amplicon Sequencing. PeerJ 2023, 11, e15124.
(15) Lapalu, N.; Simon, A.; Demenou, B.; Paumier, D.; Guillot, M.-P.; Gout, L.; Suffert, F.; Valade, R. Complete Genome Sequences of Septoria Linicola : A Resource for Studying a Damaging Flax Pathogen. MPMI 2023, 36 (1), 59–63.
(16) Vautrin, N.; Alexandre, K.; Pestel-Caron, M.; Bernard, E.; Fabre, R.; Leoz, M.; Dahyot, S.; Caron, F. Contribution of Antibiotic Susceptibility Testing and CH Typing Compared to Next-Generation Sequencing for the Diagnosis of Recurrent Urinary Tract Infections Due to Genetically Identical Escherichia Coli Isolates: A Prospective Cohort Study of Cystitis in Women. Microbiol Spectr 2023, 11 (4), e02785-22.
(17) Kalachova, T.; Jindřichová, B.; Burketová, L.; Monard, C.; Blouin, M.; Jacquiod, S.; Ruelland, E.; Puga-Freitas, R. Controlled Natural Selection of Soil Microbiome through Plant-Soil Feedback Confers Resistance to a Foliar Pathogen. Plant Soil 2023, 485 (1–2), 181–195.
(18) Clerissi, C.; Huot, C.; Portet, A.; Gourbal, B.; Toulza, E. Covariation between Microeukaryotes and Bacteria Associated with Planorbidae Snails. PeerJ 2023, 11, e16639.
(19) Gabrielli, M.; Leroy, T.; Salmona, J.; Nabholz, B.; Milá, B.; Thébaud, C. Demographic Responses of Oceanic Island Birds to Local and Regional Ecological Disruptions Revealed by Whole‐genome Sequencing. Molecular Ecology 2023, e17243.
(20) Fay, R.; Ficheux, S.; Béchet, A.; Besnard, A.; Crochet, P.; Leblois, R.; Crivelli, A.; Wattier, R.; Olivier, A. Direct and Indirect Estimates of Dispersal Support Strong Juvenile Philopatry and Male‐biased Dispersal in a Freshwater Turtle Species ( Emys Orbicularis ). Freshwater Biology 2023, 68 (12), 2042–2053.
(21) Beaumont, M.; Lencina, C.; Fève, K.; Barilly, C.; Le‐Normand, L.; Combes, S.; Devailly, G.; Boudry, G. Disruption of the Primocolonizing Microbiota Alters Epithelial Homeostasis and Imprints Stem Cells in the Colon of Neonatal Piglets. The FASEB Journal 2023, 37 (10), e23149.
(22) Lo, Y.; Bruxaux, J.; Rodríguez de la Vega, R. C.; O’Donnell, S.; Snirc, A.; Coton, M.; Le Piver, M.; Le Prieur, S.; Roueyre, D.; Dupont, J.; Houbraken, J.; Debuchy, R.; Ropars, J.; Giraud, T.; Branca, A. Domestication in Dry‐cured Meat Penicillium Fungi: Convergent Specific Phenotypes and Horizontal Gene Transfers without Strong Genetic Subdivision. Evolutionary Applications 2023, 16 (9), 1637–1660.
(23) Sartoretto, S.; Ledoux, J.; Gueret, E.; Guillemain, D.; Ravel, C.; Moirand, L.; Aurelle, D. Ecological and Genomic Characterization of a Remarkable Natural Heritage: A Mesophotic ‘Giant’ Paramuricea Clavata Forest. Mar. Ecol. Prog. Ser. 2023, SHIFT.
(24) Díaz, F. P.; Dussarrat, T.; Carrasco‐Puga, G.; Colombié, S.; Prigent, S.; Decros, G.; Bernillon, S.; Cassan, C.; Flandin, A.; Guerrero, P. C.; Gibon, Y.; Rolin, D.; Cavieres, L. A.; Pétriacq, P.; Latorre, C.; Gutiérrez, R. A. Ecological and Metabolic Implications of the Nurse Effect of Maihueniopsis Camachoi in the Atacama Desert. New Phytologist 2023, nph.19415.
(25) Hu, J.; Vandenkoornhuyse, P.; Khalfallah, F.; Causse‐Védrines, R.; Mony, C. Ecological Corridors Homogenize Plant Root Endospheric Mycobiota. New Phytologist 2023, 237 (4), 1347–1362.
(26) Wicki, M.; Raoul, J.; Legarra, A. Effect of Subdivision of the Lacaune Dairy Sheep Breed on the Accuracy of Genomic Prediction. Journal of Dairy Science 2023, 106 (8), 5570–5581.
(27) Pedro, N.; Brucato, N.; Cavadas, B.; Lisant, V.; Camacho, R.; Kinipi, C.; Leavesley, M.; Pereira, L.; Ricaut, F. First Insight into Oral Microbiome Diversity in Papua New Guineans Reveals a Specific Regional Signature. Molecular Ecology 2023, 32 (10), 2551–2564.
(28) Fruleux, A.; Duclercq, J.; Dubois, F.; Decocq, G. First Report of Ectomycorrhizae in Prunus Serotina in the Exotic Range. Plant Soil 2023, 484 (1–2), 171–181.
(29) Oury, N.; Noël, C.; Mona, S.; Aurelle, D.; Magalon, H. From Genomics to Integrative Species Delimitation? The Case Study of the Indo-Pacific Pocillopora Corals. Molecular Phylogenetics and Evolution 2023, 184, 107803.
(30) Frank, X.; Lampoh, K.; Delenne, J.-Y. From Stress Concentrations between Inclusions to Probability of Breakage: A Two-Dimensional Peridynamic Study of Particle-Embedded Materials. Phys. Rev. E 2023, 108 (3), 034903.
(31) Fuchs, S. Generation of Full-Length CircRNA Libraries for Oxford Nanopore Long-Read Sequencing V2; preprint; 2023.
(32) Blois, L.; de Miguel, M.; Bert, P.; Girollet, N.; Ollat, N.; Rubio, B.; Segura, V.; Voss‐Fels, K. P.; Schmid, J.; Marguerit, E. Genetic Structure and First Genome‐wide Insights into the Adaptation of a Wild Relative of Grapevine, Vitis Berlandieri. Evolutionary Applications 2023, 16 (6), 1184–1200.
(33) Bastide, H.; López-Villavicencio, M.; Ogereau, D.; Lledo, J.; Dutrillaux, A.-M.; Debat, V.; Llaurens, V. Genome Assembly of 3 Amazonian Morpho Butterfly Species Reveals Z-Chromosome Rearrangements between Closely Related Species Living in Sympatry. GigaScience 2022, 12, giad033.
(34) Bovio, E.; Rancurel, C.; Seassau, A.; Magliano, M.; Gislard, M.; Loisier, A.; Kuchly, C.; Ponchet, M.; Danchin, E. G. J.; Van Ghelder, C. Genome Sequence and Annotation of Periconia Digitata a Hopeful Biocontrol Agent of Phytopathogenic Oomycetes. Sci Data 2023, 10 (1), 583.
(35) Parey, E.; Louis, A.; Montfort, J.; Bouchez, O.; Roques, C.; Iampietro, C.; Lluch, J.; Castinel, A.; Donnadieu, C.; Desvignes, T.; Floi Bucao, C.; Jouanno, E.; Wen, M.; Mejri, S.; Dirks, R.; Jansen, H.; Henkel, C.; Chen, W.-J.; Zahm, M.; Cabau, C.; Klopp, C.; Thompson, A. W.; Robinson-Rechavi, M.; Braasch, I.; Lecointre, G.; Bobe, J.; Postlethwait, J. H.; Berthelot, C.; Roest Crollius, H.; Guiguen, Y. Genome Structures Resolve the Early Diversification of Teleost Fishes. Science 2023, 379 (6632), 572–575.
(36) Postaire, B. D.; Devloo‐Delva, F.; Brunnschweiler, J. M.; Charvet, P.; Chen, X.; Cliff, G.; Daly, R.; Drymon, J. M.; Espinoza, M.; Fernando, D.; Glaus, K.; Grant, M. I.; Hernandez, S.; Hyodo, S.; Jabado, R. W.; Jaquemet, S.; Johnson, G.; Naylor, G. J. P.; Nevill, J. E. G.; Pathirana, B. M.; Pillans, R. D.; Smoothey, A. F.; Tachihara, K.; Tillet, B. J.; Valerio‐Vargas, J. A.; Lesturgie, P.; Magalon, H.; Feutry, P.; Mona, S. Global Genetic Diversity and Historical Demography of the Bull Shark. Journal of Biogeography 2023, jbi.14774.
(37) Evariste, L.; Mouchet, F.; Pinelli, E.; Flahaut, E.; Gauthier, L.; Barret, M. Gut Microbiota Impairment Following Graphene Oxide Exposure Is Associated to Physiological Alterations in Xenopus Laevis Tadpoles. Science of The Total Environment 2023, 857, 159515.
(38) Salmona, J.; Dresen, A.; Ranaivoson, A. E.; Manzi, S.; Le Pors, B.; Hong‐Wa, C.; Razanatsoa, J.; Andriaholinirina, N. V.; Rasoloharijaona, S.; Vavitsara, M.; Besnard, G. How Ancient Forest Fragmentation and Riparian Connectivity Generate High Levels of Genetic Diversity in a Microendemic Malagasy Tree. Molecular Ecology 2023, 32 (2), 299–315.
(39) Gaudino, M.; Salem, E.; Ducatez, M. F.; Meyer, G. Identification of Astrovirus in the Virome of the Upper and Lower Respiratory Tracts of Calves with Acute Signs of Bronchopneumonia. Microbiol Spectr 2023, 11 (6), e03026-23.
(40) Gmel, A. I.; Guichard, M.; Dainat, B.; Williams, G. R.; Eynard, S.; Vignal, A.; Servin, B.; the Beestrong Consortium; Neuditschko, M. Identification of Runs of Homozygosity in Western Honey Bees ( Apis Mellifera ) Using Whole‐genome Sequencing Data. Ecology and Evolution 2023, 13 (1), e9723.
(41) Valette, N.; Legout, A.; Goodell, B.; Alfredsen, G.; Auer, L.; Gelhaye, E.; Derrien, D. Impact of Norway Spruce Pre-Degradation Stages Induced by Gloeophyllum Trabeum on Fungal and Bacterial Communities. Fungal Ecology 2023, 61, 101188.
(42) Darriaut, R.; Tran, J.; Martins, G.; Ollat, N.; Masneuf-Pomarède, I.; Lauvergeat, V. In Grapevine Decline, Microbiomes Are Affected Differently in Symptomatic and Asymptomatic Soils. Applied Soil Ecology 2023, 183, 104767.
(43) Piles, M.; Sánchez, J. P.; Pascual, M.; Rodríguez‐Ramilo, S. T. Inbreeding Depression on Growth and Prolificacy Traits in Two Lines of Rabbit. J Animal Breeding Genetics 2023, 140 (1), 39–48.
(44) Orozco-Arias, S.; Humberto Lopez-Murillo, L.; Candamil-Cortés, M. S.; Arias, M.; Jaimes, P. A.; Rossi Paschoal, A.; Tabares-Soto, R.; Isaza, G.; Guyot, R. Inpactor2: A Software Based on Deep Learning to Identify and Classify LTR-Retrotransposons in Plant Genomes. Briefings in Bioinformatics 2023, 24 (1), bbac511.
(45) Barranger, A.; Klopp, C.; Le Bot, B.; Saramito, G.; Dupont, L.; Llopis, S.; Wiegand, C.; Binet, F. Insights into the Molecular Mechanisms of Pesticide Tolerance in the Aporrectodea Caliginosa Earthworm. Environmental Pollution 2023, 319, 120945.
(46) Noyer, M.; Bernard, M.; Verneau, O.; Palacios, C. Insights on the Particle-Attached Riverine Archaeal Community Shifts Linked to Seasons and to Multipollution during a Mediterranean Extreme Storm Event. Environ Sci Pollut Res 2023, 30 (17), 49685–49702.
(47) Biget, M.; Mony, C.; Wang, T.; Ling, N.; Miteul, A.; Jambon, O.; Causse-Védrines, R.; Michon-Coudouel, S.; Hervé, M.; Chable, V.; Pernet, S.; Vandenkoornhuyse, P. Intra- and Inter-Annual Changes in Root Endospheric Microbial Communities of Grapevine Are Mainly Deterministic. Plant Soil 2023.
(48) Jourdain, J.; Barasc, H.; Faraut, T.; Calgaro, A.; Bonnet, N.; Marcuzzo, C.; Suin, A.; Barbat, A.; Hozé, C.; Besnard, F.; Taussat, S.; Grohs, C.; Kuchly, C.; Iampietro, C.; Donnadieu, C.; Pinton, A.; Boichard, D.; Capitan, A. Large-Scale Detection and Characterization of Interchromosomal Rearrangements in Normozoospermic Bulls Using Massive Genotype and Phenotype Data Sets. Genome Res. 2023, 33 (6), 957–971.
(49) Lesturgie, P.; Braun, C. D.; Clua, E.; Mourier, J.; Thorrold, S. R.; Vignaud, T.; Planes, S.; Mona, S. Like a Rolling Stone: Colonization and Migration Dynamics of the Gray Reef Shark ( Carcharhinus Amblyrhynchos ). Ecology and Evolution 2023, 13 (1), e9746.
(50) Sabra, A.; Biteau, N.; Dupuy, J.-W.; Klopp, C.; Noël, T.; Dementhon, K. Mediator Subunit Med15 Regulates Cell Morphology and Mating in Candida Lusitaniae. JoF 2023, 9 (3), 333.
(51) Fartash, A. H.; Ben, C.; Mazurier, M.; Ebrahimi, A.; Ghalandar, M.; Gentzbittel, L.; Rickauer, M. Medicago Truncatula Quantitative Resistance to a New Strain of Verticillium Alfalfae from Iran Revealed by a Genome-Wide Association Study. Front. Plant Sci. 2023, 14, 1125551.
(52) Boggio, G. M.; Christensen, O. F.; Legarra, A.; Meynadier, A.; Marie-Etancelin, C. Microbiability of Milk Composition and Genetic Control of Microbiota Effects in Sheep. Journal of Dairy Science 2023, 106 (9), 6288–6298.
(53) Leclaire, S.; Pineaux, M.; Blanchard, P.; White, J.; Hatch, S. A. Microbiota Composition and Diversity of Multiple Body Sites Vary According to Reproductive Performance in a Seabird. Molecular Ecology 2023, 32 (9), 2115–2133.
(54) Homberg, N.; Galvão Ferrarini, M.; Gaspin, C.; Sagot, M.-F. MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring. Genes 2023, 14 (3), 664.
(55) Gaudino, M.; Valarcher, J.-F.; Hägglund, S.; Näslund, K.; Zohari, S.; Ducatez, M. F.; Meyer, G. Molecular and Genetic Characterization of Bovine Parainfluenza Type 3 European Field and Vaccine Strains. Infection, Genetics and Evolution 2023, 113, 105483.
(56) Le Provost, G.; Lalanne, C.; Lesur, I.; Louvet, J.-M.; Delzon, S.; Kremer, A.; Labadie, K.; Aury, J.-M.; Da Silva, C.; Moritz, T.; Plomion, C. Oak Stands along an Elevation Gradient Have Different Molecular Strategies for Regulating Bud Phenology. BMC Plant Biol 2023, 23 (1), 108.
(57) Aurelle, D.; Haguenauer, A.; Blaise, C.; Reynes, L.; Arnaud‐Haond, S.; Boavida, J.; Cabau, C.; Klopp, C.; Lundalv, T.; Noûs, C.; Sartoretto, S.; Wienberg, C.; Jiménez, C. E.; Orejas, C. On the Specific Status of Eastern Mediterranean Dendrophyllia Corals (Cnidaria, Anthozoa): Genetic Characterization and Speciation Scenarios. Zoologica Scripta 2023, zsc.12643.
(58) Nouwen, N.; Pervent, M.; El M’Chirgui, F.; Tellier, F.; Rios, M.; Horta Araújo, N.; Klopp, C.; Gressent, F.; Arrighi, J.-F. OROSOMUCOID PROTEIN 1 Regulation of Sphingolipid Synthesis Is Required for Nodulation in Aeschynomene Evenia. Plant Physiology 2023, kiad642.
(59) Allio, R.; Delsuc, F.; Belkhir, K.; Douzery, E. J. P.; Ranwez, V.; Scornavacca, C. OrthoMaM V12: A Database of Curated Single-Copy Ortholog Alignments and Trees to Study Mammalian Evolutionary Genomics. Nucleic Acids Research 2023, gkad834.
(60) Antonios, S.; Legarra, A.; Pong-Wong, R.; Astruc, J. M.; Rodríguez-Ramilo, S. T.; Vitezica, Z. G. Partitioning of the Genetic Trends of French Dairy Sheep in Mendelian Samplings and Long-Term Contributions. Journal of Dairy Science 2023, 106 (9), 6275–6287.
(61) Boisseau, M.; Mach, N.; Basiaga, M.; Kuzmina, T.; Laugier, C.; Sallé, G. Patterns of Variation in Equine Strongyle Community Structure across Age Groups and Gut Compartments. Parasites Vectors 2023, 16 (1), 64.
(62) Samain, E.; Duclercq, J.; Ait Barka, E.; Eickermann, M.; Ernenwein, C.; Mazoyon, C.; Sarazin, V.; Dubois, F.; Aussenac, T.; Selim, S. PGPR-Soil Microbial Communities’ Interactions and Their Influence on Wheat Growth Promotion and Resistance Induction against Mycosphaerella Graminicola. Biology 2023, 12 (11), 1416.
(63) Rancilhac, L.; Miralles, A.; Geniez, P.; Mendez-Aranda, D.; Beddek, M.; Brito, J. C.; Leblois, R.; Crochet, P.-A. Phylogeographic Breaks and How to Find Them: An Empirical Attempt at Separating Vicariance from Isolation by Distance in a Lizard with Restricted Dispersal. Peer Community Journal 2023, 3, e74.
(64) Le Graverand, Q.; Marie-Etancelin, C.; Meynadier, A.; Weisbecker, J.-L.; Marcon, D.; Tortereau, F. Predicting Feed Efficiency Traits in Growing Lambs from Their Ruminal Microbiota. animal 2023, 17 (6), 100824.
(65) Pont, F.; Cerapio, J. P.; Gravelle, P.; Ligat, L.; Valle, C.; Sarot, E.; Perrier, M.; Lopez, F.; Laurent, C.; Fournié, J. J.; Tosolini, M. Single-Cell Spatial Explorer: Easy Exploration of Spatial and Multimodal Transcriptomics. BMC Bioinformatics 2023, 24 (1), 30.
(66) Duley, E.; Iribar, A.; Bisson, C.; Chave, J.; Donald, J. Soil Environmental DNA Metabarcoding Can Quantify Local Plant Diversity for Biomonitoring across Varied Environments. Restoration Ecology 2023, 31 (4), e13831.
(67) Noujarède, J.; Carrié, L.; Garcia, V.; Grimont, M.; Eberhardt, A.; Mucher, E.; Genais, M.; Schreuder, A.; Carpentier, S.; Ségui, B.; Nieto, L.; Levade, T.; Puig, S.; Torres, T.; Malvehy, J.; Harou, O.; Lopez, J.; Dalle, S.; Caramel, J.; Gibot, L.; Riond, J.; Andrieu-Abadie, N. Sphingolipid Paracrine Signaling Impairs Keratinocyte Adhesion to Promote Melanoma Invasion. Cell Reports 2023, 42 (12), 113586.
(68) Rougemont, Q.; Huber, B.; Martin, S. H.; Whibley, A.; Estrada, C.; Solano, D.; Orpet, R.; McMillan, W. O.; Frérot, B.; Joron, M. Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies. Molecular Biology and Evolution 2023, 40 (7), msad166.
(69) Kurylo, C.; Guyomar, C.; Foissac, S.; Djebali, S. TAGADA: A Scalable Pipeline to Improve Genome Annotations with RNA-Seq Data. NAR Genomics and Bioinformatics 2023, 5 (4), lqad089.
(70) Beaumont, M.; Lencina, C.; Bertide, A.; Gallo, L.; Barilly, C.; Marrauld, C.; Cauquil, L.; Samson, A.; Combes, S. The Early Life Microbiota Is Not a Major Factor Underlying the Susceptibility to Postweaning Diarrhea in Piglets. Microbiol Spectr 2023, 11 (4), e00694-23.
(71) Huang, K.; Jahani, M.; Gouzy, J.; Legendre, A.; Carrere, S.; Lázaro-Guevara, J. M.; González Segovia, E. G.; Todesco, M.; Mayjonade, B.; Rodde, N.; Cauet, S.; Dufau, I.; Staton, S. E.; Pouilly, N.; Boniface, M.-C.; Tapy, C.; Mangin, B.; Duhnen, A.; Gautier, V.; Poncet, C.; Donnadieu, C.; Mandel, T.; Hübner, S.; Burke, J. M.; Vautrin, S.; Bellec, A.; Owens, G. L.; Langlade, N.; Muños, S.; Rieseberg, L. H. The Genomics of Linkage Drag in Inbred Lines of Sunflower. Proc. Natl. Acad. Sci. U.S.A. 2023, 120 (14), e2205783119.
(72) Poulet, A.; Rousselot, E.; Téletchéa, S.; Noirot, C.; Jacob, Y.; van Wolfswinkel, J.; Thiriet, C.; Duc, C. The Histone Chaperone Network Is Highly Conserved in Physarum Polycephalum. IJMS 2023, 24 (2), 1051.
(73) Khajavi, L.; Nguyen, X.-H.; Queriault, C.; Chabod, M.; Barateau, L.; Dauvilliers, Y.; Zytnicki, M.; Liblau, R. The Transcriptomics Profiling of Blood CD4 and CD8 T-Cells in Narcolepsy Type I. Front. Immunol. 2023, 14, 1249405.
(74) Urvois, T.; Perrier, C.; Roques, A.; Sauné, L.; Courtin, C.; Kajimura, H.; Hulcr, J.; Cognato, A. I.; Auger‐Rozenberg, M. ‐A.; Kerdelhué, C. The Worldwide Invasion History of a Pest Ambrosia Beetle Inferred Using Population Genomics. Molecular Ecology 2023, 32 (15), 4381–4400.
(75) Wagner, S.; Seguin‐Orlando, A.; Leplé, J.; Leroy, T.; Lalanne, C.; Labadie, K.; Aury, J.; Poirier, S.; Wincker, P.; Plomion, C.; Kremer, A.; Orlando, L. Tracking Population Structure and Phenology through Time Using Ancient Genomes from Waterlogged White Oak Wood. Molecular Ecology 2023, mec.16859.
(76) Aumont, O.; Ben Ari, T.; Mariette, J.; Jeanneau, L.; Spiga, A.; Lefort, G.; Roche, P.; Santerne, A.; Estevez-Torres, A. Traveling for Academic Research : Patterns, Determinants and Mitigation Options; other; display, 2023.
(77) Mohamed, M.; Sabot, F.; Varoqui, M.; Mugat, B.; Audouin, K.; Pélisson, A.; Fiston-Lavier, A.-S.; Chambeyron, S. TrEMOLO: Accurate Transposable Element Allele Frequency Estimation Using Long-Read Sequencing Data Combining Assembly and Mapping-Based Approaches. Genome Biol 2023, 24 (1), 63.
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