Publications 2023

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure / Funding / Staff members). All Sigenae’s publications have used the GenoToul Bioinformatics hardware infrastructure.

(1) Kuhl, H.; Tan, W. H.; Klopp, C.; Kleiner, W.; Koyun, B.; Ciorpac, M.; Feron, R.; Knytl, M.; Kloas, W.; Schartl, M.; Winkler, C.; Stöck, M. A Candidate Sex Determination Locus in Amphibians Which Evolved by Structural Variation between X- and Y-Chromosomes. Nat Commun 2024, 15 (1), 4781. https://doi.org/10.1038/s41467-024-49025-2.
(2) Pubert, C.; Boniface, M.-C.; Legendre, A.; Chabaud, M.; Carrère, S.; Callot, C.; Cravero, C.; Dufau, I.; Patrascoiu, M.; Baussart, A.; Belmonte, E.; Gautier, V.; Poncet, C.; Zhao, J.; Hu, L.; Zhou, W.; Langlade, N.; Vautrin, S.; Coussy, C.; Muños, S. A Cluster of Putative Resistance Genes Is Associated with a Dominant Resistance to Sunflower Broomrape. Theor Appl Genet 2024, 137 (5), 103. https://doi.org/10.1007/s00122-024-04594-0.
(3) Heurtevin, L.; Confolent, C.; Lambert, P.; Bureau, S.; Pascal, T.; Shen, Z.; Quilot, B. A Deletion in a Photosynthesis-Related Gene (PpPSAK) Determines the Anthocyanin Accumulation in the Mesocarp of French Blood-Flesh Peaches. July 10, 2024. https://doi.org/10.21203/rs.3.rs-4569955/v1.
(4) Dupuy, J.; Fouché, E.; Noirot, C.; Martin, P.; Buisson, C.; Guéraud, F.; Pierre, F.; Héliès-Toussaint, C. A Dual Model of Normal vs Isogenic Nrf2-Depleted Murine Epithelial Cells to Explore Oxidative Stress Involvement. Sci Rep 2024, 14 (1), 10905. https://doi.org/10.1038/s41598-024-60938-2.
(5) Paës, C.; Beaumont, M.; Gidenne, T.; Bébin, K.; Duperray, J.; Gohier, C.; Guené-Grand, E.; Rebours, G.; Castinel, A.; Barilly, C.; Gabinaud, B.; Bannelier, C.; Gress, L.; Laperruque, F.; Aymard, P.; Debrusse, A.-M.; Cauquil, L.; Pascal, G.; Combes, S. A Multi-Omics Dataset of the Response to Early Plant Polysaccharide Ingestion in Rabbits. Sci Data 2024, 11 (1), 684. https://doi.org/10.1038/s41597-024-03471-1.
(6) Servien, R.; Vialaneix, N. A Random Forest Approach for Interval Selection in Functional Regression. Statistical Analysis 2024, 17 (4), e11705. https://doi.org/10.1002/sam.11705.
(7) Ben Braiek, M.; Szymczak, S.; André, C.; Bardou, P.; Fidelle, F.; Granado‐Tajada, I.; Plisson‐Petit, F.; Sarry, J.; Woloszyn, F.; Moreno‐Romieux, C.; Fabre, S. A Single Base Pair Duplication in the SLC33A1 Gene Is Associated with Fetal Losses and Neonatal Lethality in Manech Tête Rousse Dairy Sheep. Animal Genetics 2024, 55 (4), 644–657. https://doi.org/10.1111/age.13459.
(8) Lesur, I.; Rogier, O.; Sow, M. D.; Boury, C.; Duplan, A.; Garnier, A.; Senhaji-Rachik, A.; Civan, P.; Daron, J.; Delaunay, A.; Duvaux, L.; Benoit, V.; Guichoux, E.; Le Provost, G.; Sanou, E.; Ambroise, C.; Plomion, C.; Salse, J.; Segura, V.; Tost, J.; Maury, S. A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak. Journal of Experimental Botany 2024, 75 (18), 5568–5584. https://doi.org/10.1093/jxb/erae266.
(9) Neuvial, P.; Randriamihamison, N.; Chavent, M.; Foissac, S.; Vialaneix, N. A Two-Sample Tree-Based Test for Hierarchically Organized Genomic Signals. Journal of the Royal Statistical Society Series C: Applied Statistics 2024, 73 (3), 774–795. https://doi.org/10.1093/jrsssc/qlae011.
(10) Cortinovis, G.; Vincenzi, L.; Anderson, R.; Marturano, G.; Marsh, J. I.; Bayer, P. E.; Rocchetti, L.; Frascarelli, G.; Lanzavecchia, G.; Pieri, A.; Benazzo, A.; Bellucci, E.; Di Vittori, V.; Nanni, L.; Ferreira Fernández, J. J.; Rossato, M.; Aguilar, O. M.; Morrell, P. L.; Rodriguez, M.; Gioia, T.; Neumann, K.; Alvarez Diaz, J. C.; Gratias, A.; Klopp, C.; Bitocchi, E.; Geffroy, V.; Delledonne, M.; Edwards, D.; Papa, R. Adaptive Gene Loss in the Common Bean Pan-Genome during Range Expansion and Domestication. Nat Commun 2024, 15 (1), 6698. https://doi.org/10.1038/s41467-024-51032-2.
(11) Croville, G.; Walch, M.; Sécula, A.; Lèbre, L.; Silva, S.; Filaire, F.; Guérin, J.-L. An Amplicon-Based Nanopore Sequencing Workflow for Rapid Tracking of Avian Influenza Outbreaks, France, 2020-2022. Front. Cell. Infect. Microbiol. 2024, 14, 1257586. https://doi.org/10.3389/fcimb.2024.1257586.
(12) Lanoizelet, M.; Michel, L.; Lagadec, R.; Mayeur, H.; Guichard, L.; Logeux, V.; Séverac, D.; Martin, K.; Klopp, C.; Marcellini, S.; Castillo, H.; Pollet, N.; Candal, E.; Debiais-Thibaud, M.; Boisvert, C.; Billoud, B.; Schubert, M.; Blader, P.; Mazan, S. Analysis of a Shark Reveals Ancient, Wnt-Dependent, Habenular Asymmetries in Vertebrates. Nat Commun 2024, 15 (1), 10194. https://doi.org/10.1038/s41467-024-54042-2.
(13) Arzelier, A.; De Belvalet, H.; Pemonge, M.-H.; Garberi, P.; Binder, D.; Duday, H.; Deguilloux, M.-F.; Pruvost, M. Ancient DNA Sheds Light on the Funerary Practices of Late Neolithic Collective Burial in Southern France. Proc. R. Soc. B. 2024, 291 (2029), rspb.2024.1215. https://doi.org/10.1098/rspb.2024.1215.
(14) Boisseaux, M.; Troispoux, V.; Bordes, A.; Cazal, J.; Cazal, S.; Coste, S.; Stahl, C.; Schimann, H. Are Plant Traits Drivers of Endophytic Communities in Seasonally Flooded Tropical Forests? American J of Botany 2024, 111 (12), e16366. https://doi.org/10.1002/ajb2.16366.
(15) Veillat, L.; Boyer, S.; Querejeta, M.; Magnoux, E.; Roques, A.; Lopez-Vaamonde, C.; Roux, G. Benchmarking Three DNA Metabarcoding Technologies for Efficient Detection of Non-Native Cerambycid Beetles in Trapping Collections. NB 2024, 96, 237–259. https://doi.org/10.3897/neobiota.96.130195.
(16) Mainguy, J.; Hoede, C. Binette: A Fast and Accurate Bin Refinement Tool Toconstruct High Quality Metagenome Assembled Genomes. JOSS 2024, 9 (102), 6782. https://doi.org/10.21105/joss.06782.
(17) Dufour, A.; Kurylo, C.; Stöckl, J. B.; Laloë, D.; Bailly, Y.; Manceau, P.; Martins, F.; Turhan, A. G.; Ferchaud, S.; Pain, B.; Fröhlich, T.; Foissac, S.; Artus, J.; Acloque, H. Cell Specification and Functional Interactions in the Pig Blastocyst Inferred from Single-Cell Transcriptomics and Uterine Fluids Proteomics. Genomics 2024, 116 (2), 110780. https://doi.org/10.1016/j.ygeno.2023.110780.
(18) Baraille, M.; Buttet, M.; Grimm, P.; Milojevic, V.; Julliand, S.; Julliand, V. Changes of Faecal Bacterial Communities and Microbial Fibrolytic Activity in Horses Aged from 6 to 30 Years Old. PLoS ONE 2024, 19 (6), e0303029. https://doi.org/10.1371/journal.pone.0303029.
(19) Malsa, J.; Boudesocque-Delaye, L.; Wimel, L.; Auclair-Ronzaud, J.; Dumont, B.; Mach, N.; Reigner, F.; Guégnard, F.; Chereau, A.; Serreau, D.; Théry-Koné, I.; Sallé, G.; Fleurance, G. Chicory (Cichorium Intybus) Reduces Cyathostomin Egg Excretion and Larval Development in Grazing Horses. International Journal for Parasitology: Drugs and Drug Resistance 2024, 24, 100523. https://doi.org/10.1016/j.ijpddr.2024.100523.
(20) Forest, T.; Achaz, G.; Marbouty, M.; Bignaud, A.; Thierry, A.; Koszul, R.; Milhes, M.; Lledo, J.; Pons, J.-M.; Fuchs, J. Chromosome-Level Genome Assembly of the European Green Woodpecker Picus Viridis. G3: Genes, Genomes, Genetics 2024, 14 (5), jkae042. https://doi.org/10.1093/g3journal/jkae042.
(21) Doniol‐Valcroze, P.; Rancilhac, L.; Brito, J.; Miralles, A.; Geniez, P.; Benoit, L.; Loiseau, A.; Leblois, R.; Dufresnes, C.; Crochet, P. Combining RADseq and Contact Zone Analysis to Decipher Cryptic Diversification in Reptiles: Insights from the Spiny‐footed Lizard (Reptilia, Lacertidae). Zoologica Scripta 2024, 53 (1), 1–15. https://doi.org/10.1111/zsc.12628.
(22) Lapalu, N.; Simon, A.; Lu, A.; Plaumann, P.-L.; Amselem, J.; Pigné, S.; Auger, A.; Koch, C.; Dallery, J.-F.; O’Connell, R. J. Complete Genome of the Medicago Anthracnose Fungus, Colletotrichum Destructivum, Reveals a Mini-Chromosome-like Region within a Core Chromosome. Microbial Genomics 2024, 10 (8). https://doi.org/10.1099/mgen.0.001283.
(23) Almeida, M. M.; Cabrita, E.; Laizé, V.; Brionne, A.; Labbé, C.; Fatsini, E. Cryopreservation Did Not Affect Spermatogonia Global Methylation Profile in Senegalese Sole (Solea Senegalensis). Cryobiology 2025, 118, 105162. https://doi.org/10.1016/j.cryobiol.2024.105162.
(24) Fuster, M.; Ruiz, T.; Lamarque, A.; Coulon, M.; Legrand, B.; Sabart, M.; Latour, D.; Mallet, C. Cyanosphere Dynamic During Dolichospermum Bloom: Potential Roles in Cyanobacterial Proliferation. Microb Ecol 2023, 87 (1), 3. https://doi.org/10.1007/s00248-023-02317-4.
(25) Lumeau, A.; Bery, N.; Francès, A.; Gayral, M.; Labrousse, G.; Ribeyre, C.; Lopez, C.; Nevot, A.; El Kaoutari, A.; Hanoun, N.; Sarot, E.; Perrier, M.; Pont, F.; Cerapio, J.-P.; Fournié, J.-J.; Lopez, F.; Madrid-Mencia, M.; Pancaldi, V.; Pillaire, M.-J.; Bergoglio, V.; Torrisani, J.; Dusetti, N.; Hoffmann, J.-S.; Buscail, L.; Lutzmann, M.; Cordelier, P. Cytidine Deaminase Resolves Replicative Stress and Protects Pancreatic Cancer from DNA-Targeting Drugs. Cancer Research 2024, 84 (7), 1013–1028. https://doi.org/10.1158/0008-5472.CAN-22-3219.
(26) Tissot, S.; Meliani, J.; Boutry, J.; Brazier, L.; Tökölyi, J.; Roche, B.; Ujvari, B.; Nedelcu, A. M.; Thomas, F.; Dujon, A. M. De Novo Evolution of Transmissible Tumours in Hydra. Proc. R. Soc. B. 2024, 291 (2031), 20241636. https://doi.org/10.1098/rspb.2024.1636.
(27) Harlé, O.; Niay, J.; Parayre, S.; Nicolas, A.; Henry, G.; Maillard, M.-B.; Valence, F.; Thierry, A.; Guédon, É.; Falentin, H.; Deutsch, S.-M. Deciphering the Metabolism of Lactobacillus Delbrueckii Subsp. Delbrueckii during Soy Juice Fermentation Using Phenotypic and Transcriptional Analysis. Appl Environ Microbiol 2024, e01936-23. https://doi.org/10.1128/aem.01936-23.
(28) Gabrielli, M.; Leroy, T.; Salmona, J.; Nabholz, B.; Milá, B.; Thébaud, C. Demographic Responses of Oceanic Island Birds to Local and Regional Ecological Disruptions Revealed by Whole‐genome Sequencing. Molecular Ecology 2024, 33 (4), e17243. https://doi.org/10.1111/mec.17243.
(29) Hubert, J.-N.; Iannuccelli, N.; Cabau, C.; Jacomet, E.; Billon, Y.; Serre, R.-F.; Vandecasteele, C.; Donnadieu, C.; Demars, J. Detection of DNA Methylation Signatures through the Lens of Genomic Imprinting. Sci Rep 2024, 14 (1), 1694. https://doi.org/10.1038/s41598-024-52114-3.
(30) Naudin, S. A.; Ferran, A. A.; Imazaki, P. H.; Arpaillange, N.; Marcuzzo, C.; Vienne, M.; Demmou, S.; Bousquet-Mélou, A.; Ramon-Portugal, F.; Lacroix, M. Z.; Hoede, C.; Barret, M.; Dupouy, V.; Bibbal, D. Development of an in Vitro Biofilm Model for the Study of the Impact of Fluoroquinolones on Sewer Biofilm Microbiota. Front. Microbiol. 2024, 15, 1377047. https://doi.org/10.3389/fmicb.2024.1377047.
(31) Jousselin, E.; Coeur D’Acier, A.; Clamens, A.-L.; Galan, M.; Cruaud, C.; Barbe, V.; Manzano-Marín, A. Discordance between Mitochondrial, Nuclear, and Symbiont Genomes in Aphid Phylogenetics: Who Is Telling the Truth? Zoological Journal of the Linnean Society 2024, 201 (4), zlae098. https://doi.org/10.1093/zoolinnean/zlae098.
(32) Devailly, G.; Fève, K.; Saci, S.; Sarry, J.; Valière, S.; Lluch, J.; Bouchez, O.; Ravon, L.; Billon, Y.; Gilbert, H.; Riquet, J.; Beaumont, M.; Demars, J. Divergent Selection for Feed Efficiency in Pigs Altered the Duodenum Transcriptomic Response to Feed Intake and Its DNA Methylation Profiles. Physiological Genomics 2024, 56 (5), 397–408. https://doi.org/10.1152/physiolgenomics.00123.2023.
(33) Díaz, F. P.; Dussarrat, T.; Carrasco‐Puga, G.; Colombié, S.; Prigent, S.; Decros, G.; Bernillon, S.; Cassan, C.; Flandin, A.; Guerrero, P. C.; Gibon, Y.; Rolin, D.; Cavieres, L. A.; Pétriacq, P.; Latorre, C.; Gutiérrez, R. A. Ecological and Metabolic Implications of the Nurse Effect of Maihueniopsis Camachoi in the Atacama Desert. New Phytologist 2024, 241 (3), 1074–1087. https://doi.org/10.1111/nph.19415.
(34) Fleitas García, A.-R.; Guez, J.-S.; Fontanille, P.; Christophe, G. Enhanced Dark Fermentative Hydrogen Production by Initial Reduction of Oxidation-Reduction Potential. International Journal of Hydrogen Energy 2024, 87, 1338–1346. https://doi.org/10.1016/j.ijhydene.2024.08.274.
(35) Degalez, F.; Charles, M.; Foissac, S.; Zhou, H.; Guan, D.; Fang, L.; Klopp, C.; Allain, C.; Lagoutte, L.; Lecerf, F.; Acloque, H.; Giuffra, E.; Pitel, F.; Lagarrigue, S. Enriched Atlas of LncRNA and Protein-Coding Genes for the GRCg7b Chicken Assembly and Its Functional Annotation across 47 Tissues. Sci Rep 2024, 14 (1), 6588. https://doi.org/10.1038/s41598-024-56705-y.
(36) Gargiulo, R.; Decroocq, V.; González‐Martínez, S. C.; Paz‐Vinas, I.; Aury, J.; Lesur Kupin, I.; Plomion, C.; Schmitt, S.; Scotti, I.; Heuertz, M. Estimation of Contemporary Effective Population Size in Plant Populations: Limitations of Genomic Datasets. Evolutionary Applications 2024, 17 (5), e13691. https://doi.org/10.1111/eva.13691.
(37) Leclaire, S.; Bandekar, M.; Rowe, M.; Ritari, J.; Jokiniemi, A.; Partanen, J.; Allinen, P.; Kuusipalo, L.; Kekäläinen, J. Female Reproductive Tract Microbiota Varies with MHC Profile. Proc. R. Soc. B. 2024, 291 (2033), 20241334. https://doi.org/10.1098/rspb.2024.1334.
(38) Maman, S.; Bardou, P.; Lasguignes, E.; Oudin, F.; Cabanettes, F.; Klopp, C. Finding and Removing Introns from RNA-Seq de Novoassemblies with IntronSeeker. JOSS 2024, 9 (103), 6272. https://doi.org/10.21105/joss.06272.
(39) Maire, K.; Chamy, L.; Ghazali, S.; Carratala-Lasserre, M.; Zahm, M.; Bouisset, C.; Métais, A.; Combes-Soia, L.; De La Fuente-Vizuete, L.; Trad, H.; Chaubet, A.; Savignac, M.; Gonzalez De Peredo, A.; Subramaniam, A.; Joffre, O.; Lutz, P. G.; Lamsoul, I. Fine-Tuning Levels of Filamins a and b as a Specific Mechanism Sustaining Th2 Lymphocyte Functions. Nat Commun 2024, 15 (1), 10574. https://doi.org/10.1038/s41467-024-53768-3.
(40) Tusingwiire, T.; Garcia-Baccino, C.; Carillier-Jacquin, C.; Ligonesche, B.; Larzul, C.; Vitezica, Z. G. Genetic Determinism of Sensitivity to Environmental Challenges Using Daily Feed Intake Records in Three Lines of Pigs. Journal of Animal Science 2024, 102, skae330. https://doi.org/10.1093/jas/skae330.
(41) Cooke, J.; Delmas, M.; Wieder, C.; Rodríguez Mier, P.; Frainay, C.; Vinson, F.; Ebbels, T.; Poupin, N.; Jourdan, F. Genome Scale Metabolic Network Modelling for Metabolic Profile Predictions. PLoS Comput Biol 2024, 20 (2), e1011381. https://doi.org/10.1371/journal.pcbi.1011381.
(42) Gautier, M.; Micol, T.; Camus, L.; Moazami-Goudarzi, K.; Naves, M.; Guéret, E.; Engelen, S.; Lemainque, A.; Colas, F.; Flori, L.; Druet, T. Genomic Reconstruction of the Successful Establishment of a Feralized Bovine Population on the Subantarctic Island of Amsterdam. Molecular Biology and Evolution 2024, 41 (7), msae121. https://doi.org/10.1093/molbev/msae121.
(43) Daric, V.; Lanoizelet, M.; Mayeur, H.; Leblond, C.; Darras, S. Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina Lepadiformis. Genome Biology and Evolution 2024, 16 (3), evae038. https://doi.org/10.1093/gbe/evae038.
(44) Postaire, B. D.; Devloo‐Delva, F.; Brunnschweiler, J. M.; Charvet, P.; Chen, X.; Cliff, G.; Daly, R.; Drymon, J. M.; Espinoza, M.; Fernando, D.; Glaus, K.; Grant, M. I.; Hernandez, S.; Hyodo, S.; Jabado, R. W.; Jaquemet, S.; Johnson, G.; Naylor, G. J. P.; Nevill, J. E. G.; Pathirana, B. M.; Pillans, R. D.; Smoothey, A. F.; Tachihara, K.; Tillet, B. J.; Valerio‐Vargas, J. A.; Lesturgie, P.; Magalon, H.; Feutry, P.; Mona, S. Global Genetic Diversity and Historical Demography of the Bull Shark. Journal of Biogeography 2024, 51 (4), 632–648. https://doi.org/10.1111/jbi.14774.
(45) Hévin, N. M. ‐C.; Goldstein, P. Z.; Aduse‐Poku, K.; Barbut, J.; Mitchell, A.; Zilli, A.; Clamens, A.; Capdevielle‐Dulac, C.; Wahlberg, N.; Le Ru, B. P.; Kergoat, G. J. Habitat Opening Fostered Diversity: Impact of Dispersal and Habitat‐shifts in the Evolutionary History of a Speciose Afrotropical Insect Group. Ecography 2024, 2024 (8), e07258. https://doi.org/10.1111/ecog.07258.
(46) Defaix, R.; Lokesh, J.; Ghislain, M.; Le Bechec, M.; Marchand, M.; Véron, V.; Surget, A.; Biasutti, S.; Terrier, F.; Pigot, T.; Panserat, S.; Ricaud, K. High Carbohydrate to Protein Ratio Promotes Changes in Intestinal Microbiota and Host Metabolism in Rainbow Trout (Oncorhynchus Mykiss) Fed Plant-Based Diet. Aquaculture 2024, 578, 740049. https://doi.org/10.1016/j.aquaculture.2023.740049.
(47) Estay-Ahumada, C. E.; Verra, D. M.; Roux, M.; Sassone, F.; Felder-Schmittbuhl, M.-P.; Klopp, C.; Ciocca, D.; Moal, M. L.-L.; Hicks, D. Hyperglycemia and Circadian Disruption Lead to Retinal Dysfunction in a Stabilized Colony of the Fat Sand Rat Psammomys Obesus. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease 2024, 1870 (4), 167118. https://doi.org/10.1016/j.bbadis.2024.167118.
(48) Bochereau, P.; Maman Haddad, S.; Pichon, J.; Rossignol, C.; Narcy, A.; Métayer-Coustard, S.; Berri, C.; Le Bihan-Duval, E. Implication of Digestive Functions and Microbiota in the Establishment of Muscle Glycogen Differences between Divergent Lines for Ultimate PH. Sci Rep 2024, 14 (1), 24134. https://doi.org/10.1038/s41598-024-74009-z.
(49) López Villavicencio, M.; Ledamoisel, J.; Poloni, R.; Lopez-Roques, C.; Debat, V.; Llaurens, V. Increased Evolutionary Rate in the Z Chromosome of Sympatric and Allopatric Species of Morpho Butterflies. Genome Biology and Evolution 2024, 16 (11), evae227. https://doi.org/10.1093/gbe/evae227.
(50) Leroy, T.; Faux, P.; Basso, B.; Eynard, S.; Wragg, D.; Vignal, A. Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies. Molecular Biology and Evolution 2024, 41 (12), msae249. https://doi.org/10.1093/molbev/msae249.
(51) Brucato, N.; Lisant, V.; Kinipi, C.; Kik, A.; Besnard, G.; Leavesley, M.; Ricaut, F.-X. Influence of Betel Nut Chewing on Oral Microbiome in Papua New Guinea. Evolution, Medicine, and Public Health 2024, eoae030. https://doi.org/10.1093/emph/eoae030.
(52) Raimbault, A.; Brin, A.; Manzi, S.; Savoie, J. M.; Gandois, L.; Oliva, P.; Fogliani, O.; Roy-Camille, C.; Gratacap, L.; Roy, M. Influence of Habitat Fragmentation and Habitat Amount on Soil Fungi Communities in Ancient Forests. Landsc Ecol 2024, 39 (2), 19. https://doi.org/10.1007/s10980-024-01821-3.
(53) Cerapio, J. P.; Gravelle, P.; Quillet‐Mary, A.; Valle, C.; Martins, F.; Franchini, D.; Syrykh, C.; Brousset, P.; Traverse‐Glehen, A.; Ysebaert, L.; Fournie, J.; Laurent, C. Integrated Spatial and Multimodal Single‐cell Transcriptomics Reveal Patient‐dependent Cell Heterogeneity in Splenic Marginal Zone Lymphoma. The Journal of Pathology 2024, 263 (4–5), 442–453. https://doi.org/10.1002/path.6296.
(54) Oury, N.; Magalon, H. Investigating the Potential Roles of Intra-Colonial Genetic Variability in Pocillopora Corals Using Genomics. Sci Rep 2024, 14 (1), 6437. https://doi.org/10.1038/s41598-024-57136-5.
(55) Brondani, M.; Robin, A.; Marchal, J.; Pablo, A.-L.; Personne, A.; Desmarais, E.; Cerqueira, F.; Mahé, F.; Degrune, F.; Guillemot, J.; H. S. Brancalion, P.; Fromin, N. Large Variability of Soil Microbial Diversity and Functions in an Over 20-Year Old Eucalyptus Grandis Plantation. 2024. https://doi.org/10.2139/ssrn.4993280.
(56) Schmitt, S.; Heuret, P.; Troispoux, V.; Beraud, M.; Cazal, J.; Chancerel, É.; Cravero, C.; Guichoux, E.; Lepais, O.; Loureiro, J.; Marande, W.; Martin-Ducup, O.; Vincent, G.; Chave, J.; Plomion, C.; Leroy, T.; Heuertz, M.; Tysklind, N. Low-Frequency Somatic Mutations Are Heritable in Tropical Trees Dicorynia Guianensis and Sextonia Rubra. Proc. Natl. Acad. Sci. U.S.A. 2024, 121 (10), e2313312121. https://doi.org/10.1073/pnas.2313312121.
(57) Besnard, F.; Guintard, A.; Grohs, C.; Guzylack-Piriou, L.; Cano, M.; Escouflaire, C.; Hozé, C.; Leclerc, H.; Buronfosse, T.; Dutheil, L.; Jourdain, J.; Barbat, A.; Fritz, S.; Deloche, M.-C.; Remot, A.; Gaussères, B.; Clément, A.; Bouchier, M.; Contat, E.; Relun, A.; Plassard, V.; Rivière, J.; Péchoux, C.; Vilotte, M.; Eche, C.; Kuchly, C.; Charles, M.; Boulling, A.; Viard, G.; Minéry, S.; Barbey, S.; Birbes, C.; Danchin-Burge, C.; Launay, F.; Mattalia, S.; Allais-Bonnet, A.; Ravary, B.; Millemann, Y.; Guatteo, R.; Klopp, C.; Gaspin, C.; Iampietro, C.; Donnadieu, C.; Milan, D.; Arcangioli, M.-A.; Boussaha, M.; Foucras, G.; Boichard, D.; Capitan, A. Massive Detection of Cryptic Recessive Genetic Defects in Dairy Cattle Mining Millions of Life Histories. Genome Biol 2024, 25 (1), 248. https://doi.org/10.1186/s13059-024-03384-7.
(58) Zhang, J.; Li, C.; Li, W.; Shi, Z.; Liu, Z.; Zhou, J.; Tang, J.; Ren, Z.; Qiao, Y.; Liu, D. Mechanism of Luteolin against Non-Small-Cell Lung Cancer: A Study Based on Network Pharmacology, Molecular Docking, Molecular Dynamics Simulation, and in Vitro Experiments. Front. Oncol. 2024, 14, 1471109. https://doi.org/10.3389/fonc.2024.1471109.
(59) Darriaut, R.; Marzari, T.; Lailheugue, V.; Tran, J.; Martins, G.; Marguerit, E.; Masneuf-Pomarède, I.; Lauvergeat, V. Microbial Dysbiosis in Roots and Rhizosphere of Grapevines Experiencing Decline Is Associated with Active Metabolic Functions. Front. Plant Sci. 2024, 15, 1358213. https://doi.org/10.3389/fpls.2024.1358213.
(60) Costes, V.; Sellem, E.; Marthey, S.; Hoze, C.; Bonnet, A.; Schibler, L.; Kiefer, H.; Jaffrezic, F. Multi-Omics Data Integration for the Identification of Biomarkers for Bull Fertility. PLoS ONE 2024, 19 (2), e0298623. https://doi.org/10.1371/journal.pone.0298623.
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