Publications 2010

  • Servin B, de Givry S, Faraut T. Statistical confidence measures for genomemaps: application to the validation of genome assemblies. Bioinformatics. 2010 Dec 15;26(24):3035-42.see
  • Oulion S, Debiais-Thibaud M, d’Aubenton-Carafa Y, Thermes C, Da Silva C, Bernard-Samain S, Gavory F, Wincker P, Mazan S, Casane D. Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark  (Scyliorhinus canicula) transcriptome. Mol Biol Evol. 2010 Dec;27(12):2829-38. see
  • Gaspin C, Rami JF, Lescurre B. Distribution of short interstitial telomere motifs in plant genomes. BMC Plant Biology 2010, 10:283doi:10.1186/1471-2229-10-283 see
  • Legarra A, Robert-Granié C, Croiseau P, Guillaume F, Fritz S. Improved Lasso for genomic selection. Genet Res 2010 Déc;:1-11 see
  • Ueno S, Le Provost G, Leger V, Klopp C, Noirot C, Frigerio J, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Leger P, Cabane C, Barre A, de Daruvar A, Couloux A, Wincker P, Reviron M, Kremer A, Plomion C. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics 2010;11(1):650.see
  • Lena Tasse, Juliette Bercovici, Sandra Pizzut-Serin, Patrick Robe, Julien Tap, Christophe Klopp, Brandi L. Cantarel, Pedro M. Coutinho, Bernard Henrissat, Marion Leclerc, Joël Doré, Pierre Monsan, Magali Remaud-Simeon and Gabrielle Potocki-Veronese.Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.  Genome Research. 2010. see
  • Leroux, S. Feve, K. Vignoles, F. Bouchez, O. Klopp, C. Noirot, C. Gourichon, D. Richard, S. Leterrier, C. Beaumont, C. Minvielle, F. Vignal, A. Pitel, F. Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing. BMC Res Notes 2010/3/214 see
  • Rafael Pont-Lezica, Zoran Minic, David Roujol, Hélène San Clemente, Elisabeth Jamet Plant cell wall functional genomics: Novelties from proteomics Advances in Genetics, volume 1, MA Osborne (Ed.) (2010) chapter 10 see
  • Beaume, M., Hernandez, P., Farinelli, L., Deluen, C., Linder, P., Gaspin, C., Romby, P., Schrenzel, J., Francois, P. Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress ConditionsP., PLoS ONE 5(5): e10725. doi:10.1371/journal.pone.0010725. see
  • Jaulneau, V., Lafitte, C., Jacquet, C., Fournier, S., Salamagne, S., Briand,X., Esquerré-Tugayé, M.T., Dumas, B. (2010) Ulvan, a sulfated polysaccharide from green algae, activates plant immunity through the jasmonic acid signaling pathway. J. Biomed. Biotechnol. see
  • Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro, C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS,Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D’Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C. The genome of Theobroma cacao. Nat Genet. 2010 Dec 26. see
  • David Allouche, Simon de Givry and Thomas Schiex. Towards Parallel Non Serial Dynamic Programming for Solving Hard Weighted CSP. Lecture Notes in Computer Science, 2010, Volume 6308/2010, 53-60, DOI: 10.1007/978-3-642-15396-9_7 see