Publications 2013

  • Besnard G, Christin P-A, Malé P-J G, Coissac E, Ralimanana H, and Vorontsova MS, Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar, Ann Bot (2013) 112 (6): 1057-1066. doi:10.1093/aob/mct174. see
  • Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM.De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology. Plant Biotechnol J. 2013 Nov 21. doi: 10.1111/pbi.12136. see
  • Elsen JM, de Givry S, Katsirelos G, and Shumbusho F. Optimizing the reference population in a genomic selection design. In CP-13 workshop on Constraint Based Methods for Bioinformatics, pages 37-46, Uppsala, Sweden, 2013.
  • de Givry S, Prestwich S, and O’Sullivan B. Dead-End Elimination for Weighted CSP. In Proc. of CP-13, pages 263-272, Uppsala, Sweden, 2013. see
  • Thepot S, Ben Abdelali R, Chevret S, Renneville A, Beyne Rauzy O, Prebet T, Park S, Stamatoullas A, Guerci-Bresler A, Cheze S, Tertian G, Choufi B, Legros L, Bastie JN, Delaunay J, Wattel E, Dreyfus, Vey N, Preudhomme C, Fenaux P, and Gardin C. Prognostic Factors Of Response and Survival To Azacitidine (AZA) ± EPO In RBC Transfusion Dependent (TD) IPSS Low and Int-1 (LR) MDS Resistant To EPO, With Particular Emphasis Of Genetic Lesions: A Study By The GFM. ASH (American Society of Hematology), 2013. see
  • Girardot M, Hirasawa R, Kacem S, Fritsch L, Pontis J, Kota SK, Filipponi D, Fabbrizio E, Sardet C, Lohmann F, Kadam S, Ait-Si-Ali S, Feil R. PRMT5-mediated histone H4 arginine-3 symmetrical dimethylation marks chromatin at G + C-rich regions of the mouse genome. Nucleic Acids Res. 2013 Oct 3. doi: 10.1093/nar/gkt884. see
  • Robic A, Faraut T, Prunier A. Pathway and genes involved in steroid hormone metabolism in male pigs: a review and update. Journal of steroid biochemistry and molecular biology. Available online 12 November 2013. doi:10.1016/j.jsbmb.2013.11.001. see
  • Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, henrissat B, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O’Donohue M. Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnology for Biofuels. 2013, 6:78. doi:10.1186/1754-6834-6-78. see
  • Traoré S, Allouche D, André I, de Givry S, Katsirelos G, Schiex T, Barbe S. A new framework for computational protein design through cost function network optimization. Bioinformatics. 2013 Sep 1;29(17):2129-36. doi: 10.1093/bioinformatics/btt374. Epub 2013 Jul 10. see
  • Blanc-Mathieu R, Sanchez-Ferandin S, Eyre-Walker A, Piganeau G. Organellar Inheritance in the Green Lineage: Insights from Ostreococcus tauri. Genome Biol Evol. 2013 Jan;5(8):1503-11. doi: 10.1093/gbe/evt106. See.
  • Carré C, Gamboa F, Cros D, Hickey JM, Gorjanc G, Manfredi E. Genetic prediction of complex traits: integrating infinitesimal and marked genetic effects. Genetica. 2013 Jun;141(4-6):239-46. doi: 10.1007/s10709-013-9722-9. Epub 2013 May 30. see
  • Ben C, Debellé F, Berges H, Bellec A, Jardinaud MF, Anson P, Huguet T, Gentzbittel L, Vailleau F. MtQRRS1, an R-locus required for Medicago truncatula quantitative resistance to Ralstonia solanacearum. New Phytol. 2013 Aug;199(3):758-72. doi: 10.1111/nph.12299. Epub 2013 May 2. see
  • V Bourret, G Croville, J Mariette, C Klopp, O Bouchez, L Tiley, JL Guérin. Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells. Infection, Genetics and Evolution. 2013 May. see
  • Chancerel E, Lamy JB, Lesur I, Noirot C, Klopp C, Ehrenmann F, Boury C, Le Provost G, Label P, Lalanne C, Léger V, Salin F, Gion JM, Plomion C. High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.
    BMC Biol. 2013 Apr 18;11(1):50. see
  • Bouzid W, Klopp C, Verdenaud M, Ducancel F, Vétillard A. Profiling the venom gland transcriptome of Tetramorium bicarinatum (Hymenoptera: Formicidae): The first transcriptome analysis of an ant species. Toxicon. 2013 Apr 11. doi:pii: S0041-0101(13)00105-0. 10.1016/j.toxicon.2013.03.010. see
  • Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G. Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing. BMC Genomics. 2013 Apr 10;14:236. doi: 10.1186/1471-2164-14-236. see
  • Nizar Fawal, Qiang Li, Bruno Savelli, Marie Brette, Gisele Passaia, Maxime Fabre, Catherine Mathé and Christophe Dunand. PeroxiBase: a database for large-scale evolutionary analysis of peroxidases. Nucleic Acids Res. 2013 Jan 1;41(D1):D441-4. doi: 10.1093/nar/gks1083. Epub 2012 Nov 24. see
  • Colombani C, Legarra A, Fritz S, Guillaume F, Croiseau P, Ducrocq V, Robert-Granié C. Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesC? methods for genomic selection in French Holstein and Montbéliarde breeds. J Dairy Sci. 2013 Jan;96(1):575-91. doi: 10.3168/jds.2011-5225. Epub 2012 No. see
  • Hinaux H, Poulain J, Da Silva C, Noirot C, Jeffery WR, Casane D, Rétaux S. De Novo Sequencing of Astyanax mexicanus Surface Fish and Pachón Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes. PLoS One. 2013;8(1):e53553. doi: 10.1371/journal.pone.0053553. Epub 2013 Jan 9. see
  • Luis Alberto Garcia-Cortes, Andres Legarra, Claude Chevalet, Miguel Angel Toro. Variance and Covariance of Actual Relationships between Relatives at One Locus.PLoS One. 2013;8(2):e57003. doi: 10.1371/journal.pone.0057003. Epub 2013 Feb 22. see
  • Gschloessl B, Beyne E, Audiot P, Bourguet D, Striff R. De novo transcriptomic resources for two sibling species of moths: Ostrinia nubilalis and O. scapulalis. BMC Research Notes. 2013;6:73. doi:10.1186/1756-0500-6-73. Epub 2013 Feb 28. see
  • Baloche G, Legarra A, Sallé G, Larroque H, Astruc JM, Robert-Granié C, Barillet F. Assessment of accuracy of genomic prediction for French Lacaune dairysheep. J Dairy Sci. 2014 Feb;97(2):1107-16. doi: 10.3168/jds.2013-7135. see
  • Vitezica ZG, Varona L, Legarra A. On the additive and dominant variance and covariance of individuals within the genomic selection scope. Genetics. 2013 Dec;195(4):1223-30. see
  • Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C. High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches. New Phytol. 2013 Nov 28.see
  • Fariello MI, Boitard S, Naya H, SanCristobal M, Servin B. Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. Genetics. 2013 Mar;193(3):929-41. see
  • Auclair S, Rossetti R, Meslin C, Monestier O, Di Pasquale E, Pascal G, Persani L, Fabre S. Positive selection in bone morphogenetic protein 15 targets a natural mutation associated with primary ovarian insufficiency in human. PLoS One. 2013 Oct 16;8(10):e78199. doi: 10.1371/journal.pone.0078199. eCollection 2013. see