{"id":484,"date":"2016-05-30T11:21:45","date_gmt":"2016-05-30T09:21:45","guid":{"rendered":"http:\/\/vm-bioinfo-wp.toulouse.inra.fr\/?page_id=484"},"modified":"2025-02-12T11:02:05","modified_gmt":"2025-02-12T10:02:05","slug":"databanks","status":"publish","type":"page","link":"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/","title":{"rendered":"Databanks"},"content":{"rendered":"<div id=\"at_zurlpreview\">\u00a0<\/div>\n<p class=\"bodytext\" style=\"text-align: justify;\">The platform provides an access to a large set of public biological databanks. Their update is performed and managed with the <a class=\"spip_out\" href=\"http:\/\/biomaj.genouest.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">BioMAJ<\/a> software package. The raw files are retrieved from remote sites (EBI, NCBI, &#8230;) and the processed (Blast indexation, bwa indexation &#8230;) in order to be used by different bioinfomatic tools. The full list of available databanks and their related information (versions, last update, &#8230;) can be accessed through the\u00a0<a class=\"external-link-new-window\" href=\"https:\/\/genobanks.toulouse.inrae.fr\" target=\"_blank\" rel=\"noopener noreferrer\">BioMaji watcher<\/a> interface. If you need any other databank, or new indexes, fill the <a href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/help\/install-bank\/\">bank <\/a><a href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/help\/install-bank\/\">\u00a0installation<\/a><a href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/help\/install-bank\/\"> form<\/a>. See our <a href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/faq\/banks_faq\/\">FAQ<\/a>.<\/p>\n<p>&nbsp;<\/p>\n<p class=\"bodytext\" style=\"text-align: justify;\"><a href=\"https:\/\/genobanks.toulouse.inrae.fr\" target=\"_blank\" rel=\"noopener noreferrer\"><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-1054\" src=\"https:\/\/bioinfo.genotoul.fr\/wp-content\/uploads\/biomaj3.png\" alt=\"biomaj\" width=\"700\" height=\"522\" \/><\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u00a0 The platform provides an access to a large set of public biological databanks. Their update is performed and managed with the BioMAJ software package. The raw files are retrieved from remote sites (EBI,&#46;&#46;&#46;<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":2208,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"page-templates\/child-menu.php","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Databanks - genotoul-bioinfo<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Databanks - genotoul-bioinfo\" \/>\n<meta property=\"og:description\" content=\"\u00a0 The platform provides an access to a large set of public biological databanks. Their update is performed and managed with the BioMAJ software package. The raw files are retrieved from remote sites (EBI,&#046;&#046;&#046;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/\" \/>\n<meta property=\"og:site_name\" content=\"genotoul-bioinfo\" \/>\n<meta property=\"article:modified_time\" content=\"2025-02-12T10:02:05+00:00\" \/>\n<meta property=\"og:image\" content=\"http:\/\/bioinfo.genotoul.fr\/wp-content\/uploads\/biomaj3.png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/\",\"name\":\"Databanks - genotoul-bioinfo\",\"isPartOf\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#website\"},\"datePublished\":\"2016-05-30T09:21:45+00:00\",\"dateModified\":\"2025-02-12T10:02:05+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/bioinfo.genotoul.fr\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Resources\",\"item\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Databanks\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#website\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/\",\"name\":\"genotoul-bioinfo\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/bioinfo.genotoul.fr\/?s={search_term_string}\"},\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#organization\",\"name\":\"genotoul-bioinfo\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/\",\"url\":\"\",\"contentUrl\":\"\",\"caption\":\"genotoul-bioinfo\"},\"image\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/\"}}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Databanks - genotoul-bioinfo","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/bioinfo.genotoul.fr\/index.php\/resources-2\/databanks\/","og_locale":"en_US","og_type":"article","og_title":"Databanks - genotoul-bioinfo","og_description":"\u00a0 The platform provides an access to a large set of public biological databanks. 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