{"id":2447,"date":"2017-06-19T15:19:43","date_gmt":"2017-06-19T13:19:43","guid":{"rendered":"http:\/\/bioinfo.genotoul.fr\/?post_type=news&#038;p=2447"},"modified":"2017-07-31T10:01:25","modified_gmt":"2017-07-31T08:01:25","slug":"galaxy-news-2","status":"publish","type":"news","link":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/","title":{"rendered":"Galaxy news 2"},"content":{"rendered":"<p>This new item only concerns users of the Galaxy Sigenae \/ BioInfo Genotoul platform. It is now possible to run a galaxy tool with a large number of incoming files thanks to the &#8220;dataset collection&#8221;. Indeed, if a tool must be run in the same way on several files, it is no longer necessary to parameterize and launch the tool as many times as you have files concerned. Simply group all the files to be processed by the tool into a dataset collection, then set \/ run the tool once on this dataset collection. Galaxy then processes each file separately without having to create a pipeline for each of these files or have to run the same workflow for each of these files. The idea is to minimize the number of clicks &#8230; The detailed procedure is available in the document below.<\/p>\n<p><a href=\"https:\/\/bioinfo.genotoul.fr\/wp-content\/uploads\/howto2_dataset_collection.pdf\">galaxy_news_2.pdf<\/a><\/p>\n<a href=\"https:\/\/bioinfo.genotoul.fr\/wp-content\/uploads\/howto2_dataset_collection.pdf\" class=\"pdfemb-viewer\" style=\"\" data-width=\"max\" data-height=\"max\"  data-toolbar=\"bottom\" data-toolbar-fixed=\"off\">howto2_dataset_collection<br\/><\/a>\n","protected":false},"excerpt":{"rendered":"<p>This new item only concerns users of the Galaxy Sigenae \/ BioInfo Genotoul platform. It is now possible to run a galaxy tool with a large number of incoming files thanks to the &#8220;dataset&#46;&#46;&#46;<\/p>\n","protected":false},"author":8,"featured_media":0,"comment_status":"closed","ping_status":"closed","template":"","tags":[],"news-category":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Galaxy news 2 - genotoul-bioinfo<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Galaxy news 2 - genotoul-bioinfo\" \/>\n<meta property=\"og:description\" content=\"This new item only concerns users of the Galaxy Sigenae \/ BioInfo Genotoul platform. It is now possible to run a galaxy tool with a large number of incoming files thanks to the &#8220;dataset&#046;&#046;&#046;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/\" \/>\n<meta property=\"og:site_name\" content=\"genotoul-bioinfo\" \/>\n<meta property=\"article:modified_time\" content=\"2017-07-31T08:01:25+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/\",\"name\":\"Galaxy news 2 - genotoul-bioinfo\",\"isPartOf\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#website\"},\"datePublished\":\"2017-06-19T13:19:43+00:00\",\"dateModified\":\"2017-07-31T08:01:25+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/bioinfo.genotoul.fr\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"News\",\"item\":\"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Galaxy news 2\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#website\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/\",\"name\":\"genotoul-bioinfo\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/bioinfo.genotoul.fr\/?s={search_term_string}\"},\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#organization\",\"name\":\"genotoul-bioinfo\",\"url\":\"https:\/\/bioinfo.genotoul.fr\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/\",\"url\":\"\",\"contentUrl\":\"\",\"caption\":\"genotoul-bioinfo\"},\"image\":{\"@id\":\"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/\"}}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Galaxy news 2 - genotoul-bioinfo","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/","og_locale":"en_US","og_type":"article","og_title":"Galaxy news 2 - genotoul-bioinfo","og_description":"This new item only concerns users of the Galaxy Sigenae \/ BioInfo Genotoul platform. It is now possible to run a galaxy tool with a large number of incoming files thanks to the &#8220;dataset&#46;&#46;&#46;","og_url":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/","og_site_name":"genotoul-bioinfo","article_modified_time":"2017-07-31T08:01:25+00:00","twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/","url":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/","name":"Galaxy news 2 - genotoul-bioinfo","isPartOf":{"@id":"https:\/\/bioinfo.genotoul.fr\/#website"},"datePublished":"2017-06-19T13:19:43+00:00","dateModified":"2017-07-31T08:01:25+00:00","breadcrumb":{"@id":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/galaxy-news-2\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/bioinfo.genotoul.fr\/"},{"@type":"ListItem","position":2,"name":"News","item":"https:\/\/bioinfo.genotoul.fr\/index.php\/news\/"},{"@type":"ListItem","position":3,"name":"Galaxy news 2"}]},{"@type":"WebSite","@id":"https:\/\/bioinfo.genotoul.fr\/#website","url":"https:\/\/bioinfo.genotoul.fr\/","name":"genotoul-bioinfo","description":"","publisher":{"@id":"https:\/\/bioinfo.genotoul.fr\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/bioinfo.genotoul.fr\/?s={search_term_string}"},"query-input":"required name=search_term_string"}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/bioinfo.genotoul.fr\/#organization","name":"genotoul-bioinfo","url":"https:\/\/bioinfo.genotoul.fr\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/","url":"","contentUrl":"","caption":"genotoul-bioinfo"},"image":{"@id":"https:\/\/bioinfo.genotoul.fr\/#\/schema\/logo\/image\/"}}]}},"_links":{"self":[{"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/news\/2447"}],"collection":[{"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/news"}],"about":[{"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/types\/news"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/users\/8"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/comments?post=2447"}],"version-history":[{"count":1,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/news\/2447\/revisions"}],"predecessor-version":[{"id":2449,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/news\/2447\/revisions\/2449"}],"wp:attachment":[{"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/media?parent=2447"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/tags?post=2447"},{"taxonomy":"news-category","embeddable":true,"href":"https:\/\/bioinfo.genotoul.fr\/index.php\/wp-json\/wp\/v2\/news-category?post=2447"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}