Sequences alignment and phylogeny

16/08/2016 @ 9 h 00 – 17 h 00 – This training session is organized by the bios4Biol CATI and the Genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies. You will discover how to build a sequence dataset, to align sequences, to edit and refine the resulting alignment.   This training is focused on the practice. It consists of 4 modules […]

Methods for phylogenetic trees construction

16/08/2016 @ 9 h 00 – 17 h 00 – This training session is organized by the bios4Biol CATI and the Genotoul bioinfo platform and aims at training participants to construct and interpret phylogenetic trees. You will discover how to choose an evolutionary model and a phylogenetic inference method (among distance, parsimony, maximum likelihood and Bayesian methods) and how to evaluate the robustness of a […]

Phylogenomics and selection pressure

16/08/2016 @ 9 h 00 – 17 h 00 – This training session is organized by the bios4Biol CATI and the Genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies. The morning course will provide insights about sampling problems in phylogenomics studies (genes, species) and methodological aspects of phylogenomics studies with two major focus on super-matrix and super-tree methods. The afternoon course […]

sRNAseq

16/08/2016 @ 9 h 00 – 17 h 00 – The GenoToul bioinformatics platform, Sigenae, NED (GenPhySE) and TWB , organize a series of training courses for bio-informaticians and biologists aiming at introduce analysis of sequences produced by next-generation sequencers. An initial training on sequence alignment and polymorphisms search is provided in this context, since mid-2010. In 2011, a second course has been produced on […]

RNAseq alignment and transcripts assemblies with Galaxy

25/08/2016 @ 9 h 00 – 17 h 00 – This training session, organized jointly with the Sigenae platform, is designed to help you deal with sequences from the SGS (Second Generation Sequencing) particularly Illumina platforms (HiSeq). You will discover the new sequence file formats, learn about the usual biases of this data type and run different kind of analysis such as spliced alignment on […]

Read alignment and small size variants calling

08/03/2017 – 09/03/2017 @ 9 h 00 – 12 h 00 – The GenoToul bioinformatics platform, Sigenae, NED (GenPhySE) and TWB organize a series of training courses to familiarize yourself with the various resources it provides. These resources are currently: the hardware infrastructure, biological data banks and widely used bioinformatics softwares. This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in […]

First step with galaxy

05/04/2017 @ 9 h 00 – 17 h 00 – The SIGENAE platform, in collaboration with the Toulouse Genopole bioinformatics platform, organize a series of training courses for bio-informaticians and biologists aiming at learning analysis of sequences produced by next-generation sequencers. Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are: First, making bioinfo Linux tools accessible to biologists. Then, it is […]

RNAseq alignment and transcripts assemblies with statistics

16/05/2017 – 19/05/2017 @ 13 h 00 – 17 h 00 – The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, the Sigenae team and the MIAT unit, organize a 3.5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce […]

Galaxy initiation, RNAseq, SARTools

29/01/2018 – 31/01/2018 @ 9 h 00 – 12 h 30 – The Toulouse Genotoul bioinformatics platform, in collaboration with the Sigenae team and the MIAT unit, organize a  2.5 days long training course for biologists aiming at learning RNAseq analysis on Galaxy environment. This training focuses on practice. It consists of modules with a large variety of exercises described hereunder: Galaxy initiation (First day : 09:00 […]

RNAseq de novo assembly

05/06/2018 @ 9 h 00 – 17 h 00 – The Sigenae team organizes a training course for bio-informaticians and biologists aiming at introduce analysis of sequences. It focuses on de novo assembly (without reference genome) of reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing) and particularly Illumina platforms (HiSeq). You will use our RNA-Seq assembly […]