Publications 2020

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure / Funding / Staff members). All Sigenae’s publications have used the GenoToul Bioinformatics hardware infrastructure.

(1)
Kusch, S.; Ibrahim, H. M. M.; Zanchetta, C.; Lopez-Roques, C.; Donnadieu, C.; Raffaele, S. A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia Sulcatula Infecting Sedge Grass ( Carex Sp.). MPMI 2020, 33 (7), 880–883. https://doi.org/10.1094/MPMI-03-20-0060-A.
(2)
Rasplus, J.-Y.; Blaimer, B. B.; Brady, S. G.; Burks, R. A.; Delvare, G.; Fisher, N.; Gates, M.; Gauthier, N.; Gumovsky, A. V.; Hansson, C.; Heraty, J. M.; Fusu, L.; Nidelet, S.; Pereira, R. A. S.; Sauné, L.; Ubaidillah, R.; Cruaud, A. A First Phylogenomic Hypothesis for Eulophidae (Hymenoptera, Chalcidoidea). null 2020, 54 (9–12), 597–609. https://doi.org/10.1080/00222933.2020.1762941.
(3)
Boyrie, L.; Moreau, C.; Frugier, F.; Jacquet, C.; Bonhomme, M. A Linkage Disequilibrium-Based Statistical Test for Genome-Wide Epistatic Selection Scans in Structured Populations. Heredity 2020. https://doi.org/10.1038/s41437-020-0349-1.
(4)
Donald, J.; Roy, M.; Suescun, U.; Iribar, A.; Manzi, S.; Péllissier, L.; Gaucher, P.; Chave, J. A Test of Community Assembly Rules Using Foliar Endophytes from a Tropical Forest Canopy. J Ecol 2020, 108 (4), 1605–1616. https://doi.org/10.1111/1365-2745.13344.
(5)
Milon, N.; Fuentes Rojas, J.-L.; Castinel, A.; Bigot, L.; Bouwmans, G.; Baudelle, K.; Boutonnet, A.; Gibert, A.; Bouchez, O.; Donnadieu, C.; Ginot, F.; Bancaud, A. A Tunable Filter for High Molecular Weight DNA Selection and Linked-Read Sequencing. Lab Chip 2020, 20 (1), 175–184. https://doi.org/10.1039/C9LC00965E.
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Olazcuaga, L.; Loiseau, A.; Parrinello, H.; Paris, M.; Fraimout, A.; Guedot, C.; Diepenbrock, L. M.; Kenis, M.; Zhang, J.; Chen, X.; Borowiec, N.; Facon, B.; Vogt, H.; Price, D. K.; Vogel, H.; Prud’homme, B.; Estoup, A.; Gautier, M. A Whole-Genome Scan for Association with Invasion Success in the Fruit Fly Drosophila Suzukii Using Contrasts of Allele Frequencies Corrected for Population Structure. Molecular Biology and Evolution 2020, 37 (8), 2369–2385. https://doi.org/10.1093/molbev/msaa098.
(7)
Leroy, T.; Louvet, J.; Lalanne, C.; Le Provost, G.; Labadie, K.; Aury, J.; Delzon, S.; Plomion, C.; Kremer, A. Adaptive Introgression as a Driver of Local Adaptation to Climate in European White Oaks. New Phytol 2020, 226 (4), 1171–1182. https://doi.org/10.1111/nph.16095.
(8)
Radhakrishnan, G. V.; Keller, J.; Rich, M. K.; Vernié, T.; Mbadinga Mbadinga, D. L.; Vigneron, N.; Cottret, L.; Clemente, H. S.; Libourel, C.; Cheema, J.; Linde, A.-M.; Eklund, D. M.; Cheng, S.; Wong, G. K. S.; Lagercrantz, U.; Li, F.-W.; Oldroyd, G. E. D.; Delaux, P.-M. An Ancestral Signalling Pathway Is Conserved in Intracellular Symbioses-Forming Plant Lineages. Nature Plants 2020, 6 (3), 280–289. https://doi.org/10.1038/s41477-020-0613-7.
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Dutech, C.; Feau, N.; Lesur, I.; Ehrenmann, F.; Letellier, T.; Li, B.; Mouden, C.; Guichoux, E.; Desprez-Loustau, M. L.; Gross, A. An Easy and Robust Method for Isolation and Validation of Single-Nucleotide Polymorphic Markers from a First Erysiphe Alphitoides Draft Genome. Mycol Progress 2020, 19 (6), 615–628. https://doi.org/10.1007/s11557-020-01580-w.
(10)
Jehl, F.; Muret, K.; Bernard, M.; Boutin, M.; Lagoutte, L.; Désert, C.; Dehais, P.; Esquerré, D.; Acloque, H.; Giuffra, E.; Djebali, S.; Foissac, S.; Derrien, T.; Pitel, F.; Zerjal, T.; Klopp, C.; Lagarrigue, S. An Integrative Atlas of Chicken Long Non-Coding Genes and Their Annotations across 25 Tissues. Sci Rep 2020, 10 (1), 20457. https://doi.org/10.1038/s41598-020-77586-x.
(11)
Dardaillon, J.; Dauga, D.; Simion, P.; Faure, E.; Onuma, T. A.; DeBiasse, M. B.; Louis, A.; Nitta, K. R.; Naville, M.; Besnardeau, L.; Reeves, W.; Wang, K.; Fagotto, M.; Guéroult-Bellone, M.; Fujiwara, S.; Dumollard, R.; Veeman, M.; Volff, J.-N.; Roest Crollius, H.; Douzery, E.; Ryan, J. F.; Davidson, B.; Nishida, H.; Dantec, C.; Lemaire, P. ANISEED 2019: 4D Exploration of Genetic Data for an Extended Range of Tunicates. Nucleic Acids Research 2020, 48 (D1), D668–D675. https://doi.org/10.1093/nar/gkz955.
(12)
Randriamihamison, N.; Vialaneix, N.; Neuvial, P. Applicability and Interpretability of Ward’s Hierarchical Agglomerative Clustering With or Without Contiguity Constraints. Journal of Classification 2020. https://doi.org/10.1007/s00357-020-09377-y.
(13)
Chambers, E. A.; Hebert, P. D. N. Assessing DNA Barcodes for Species Identification in North American Reptiles and Amphibians in Natural History Collections. PLoS One 2016, 11 (4), e0154363. https://doi.org/10.1371/journal.pone.0154363.
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Reverter, A.; Vitezica, Z. G.; Naval-Sánchez, M.; Henshall, J.; Raidan, F. S. S.; Li, Y.; Meyer, K.; Hudson, N. J.; Porto-Neto, L. R.; Legarra, A. Association Analysis of Loci Implied in “Buffering” Epistasis. Journal of Animal Science 2020, 98 (skaa045). https://doi.org/10.1093/jas/skaa045.
(15)
Macedo, F. L.; Reverter, A.; Legarra, A. Behavior of the Linear Regression Method to Estimate Bias and Accuracies with Correct and Incorrect Genetic Evaluation Models. Journal of Dairy Science 2020, 103 (1), 529–544. https://doi.org/10.3168/jds.2019-16603.
(16)
Macedo, F. L.; Christensen, O. F.; Astruc, J.-M.; Aguilar, I.; Masuda, Y.; Legarra, A. Bias and Accuracy of Dairy Sheep Evaluations Using BLUP and SSGBLUP with Metafounders and Unknown Parent Groups. Genetics Selection Evolution 2020, 52 (1), 47. https://doi.org/10.1186/s12711-020-00567-1.
(17)
Joulian, C.; Fonti, V.; Chapron, S.; Bryan, C. G.; Guezennec, A.-G. Bioleaching of Pyritic Coal Wastes: Bioprospecting and Efficiency of Selected Consortia. Research in Microbiology 2020, 171 (7), 260–270. https://doi.org/10.1016/j.resmic.2020.08.002.
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Mat, A. M.; Sarrazin, J.; Markov, G. V.; Apremont, V.; Dubreuil, C.; Eché, C.; Fabioux, C.; Klopp, C.; Sarradin, P.-M.; Tanguy, A.; Huvet, A.; Matabos, M. Biological Rhythms in the Deep-Sea Hydrothermal Mussel Bathymodiolus Azoricus. Nat Commun 2020, 11 (1), 3454. https://doi.org/10.1038/s41467-020-17284-4.
(19)
Feron, R.; Zahm, M.; Cabau, C.; Klopp, C.; Roques, C.; Bouchez, O.; Eché, C.; Valière, S.; Donnadieu, C.; Haffray, P.; Bestin, A.; Morvezen, R.; Acloque, H.; Euclide, P. T.; Wen, M.; Jouano, E.; Schartl, M.; Postlethwait, J. H.; Schraidt, C.; Christie, M. R.; Larson, W. A.; Herpin, A.; Guiguen, Y. Characterization of a Y‐specific Duplication/Insertion of the Anti‐Mullerian Hormone Type II Receptor Gene Based on a Chromosome‐scale Genome Assembly of Yellow Perch, Perca Flavescens. Mol Ecol Resour 2020, 20 (2), 531–543. https://doi.org/10.1111/1755-0998.13133.
(20)
Miyauchi, S.; Hage, H.; Drula, E.; Lesage-Meessen, L.; Berrin, J.-G.; Navarro, D.; Favel, A.; Chaduli, D.; Grisel, S.; Haon, M.; Piumi, F.; Levasseur, A.; Lomascolo, A.; Ahrendt, S.; Barry, K.; LaButti, K. M.; Chevret, D.; Daum, C.; Mariette, J.; Klopp, C.; Cullen, D.; de Vries, R. P.; Gathman, A. C.; Hainaut, M.; Henrissat, B.; Hildén, K. S.; Kües, U.; Lilly, W.; Lipzen, A.; Mäkelä, M. R.; Martinez, A. T.; Morel-Rouhier, M.; Morin, E.; Pangilinan, J.; Ram, A. F. J.; Wösten, H. A. B.; Ruiz-Dueñas, F. J.; Riley, R.; Record, E.; Grigoriev, I. V.; Rosso, M.-N. Conserved White-Rot Enzymatic Mechanism for Wood Decay in the Basidiomycota Genus Pycnoporus. DNA Research 2020, 27 (2), dsaa011. https://doi.org/10.1093/dnares/dsaa011.
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Policarpo, M.; Fumey, J.; Lafargeas, P.; Naquin, D.; Thermes, C.; Naville, M.; Dechaud, C.; Volff, J.-N.; Cabau, C.; Klopp, C.; Møller, P. R.; Bernatchez, L.; García-Machado, E.; Rétaux, S.; Casane, D. Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals. Molecular Biology and Evolution 2020, msaa249. https://doi.org/10.1093/molbev/msaa249.
(22)
Mussard, E.; Pouzet, C.; Helies, V.; Pascal, G.; Fourre, S.; Cherbuy, C.; Rubio, A.; Vergnolle, N.; Combes, S.; Beaumont, M. Culture of Rabbit Caecum Organoids by Reconstituting the Intestinal Stem Cell Niche in Vitro with Pharmacological Inhibitors or L-WRN Conditioned Medium. Stem Cell Research 2020, 48, 101980. https://doi.org/10.1016/j.scr.2020.101980.
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Payton, L.; Noirot, C.; Hoede, C.; Hüppe, L.; Last, K.; Wilcockson, D.; Ershova, E. A.; Valière, S.; Meyer, B. Daily Transcriptomes of the Copepod Calanus Finmarchicus during the Summer Solstice at High Arctic Latitudes. Scientific Data 2020, 7 (1), 415. https://doi.org/10.1038/s41597-020-00751-4.
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Rougemont, Q.; Moore, J.-S.; Leroy, T.; Normandeau, E.; Rondeau, E. B.; Withler, R. E.; Van Doornik, D. M.; Crane, P. A.; Naish, K. A.; Garza, J. C.; Beacham, T. D.; Koop, B. F.; Bernatchez, L. Demographic History Shaped Geographical Patterns of Deleterious Mutation Load in a Broadly Distributed Pacific Salmon. PLoS Genet 2020, 16 (8), e1008348. https://doi.org/10.1371/journal.pgen.1008348.
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mariadassou, M.; Ramayo‐Caldas, Y.; Charles, M.; Féménia, M.; Renand, G.; Rocha, D. Detection of Selection Signatures in Limousin Cattle Using Whole‐genome Resequencing. Anim Genet 2020, 51 (5), 815–819. https://doi.org/10.1111/age.12982.
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Teyssier, A.; Matthysen, E.; Hudin, N. S.; de Neve, L.; White, J.; Lens, L. Diet Contributes to Urban-Induced Alterations in Gut Microbiota: Experimental Evidence from a Wild Passerine. Proceedings of the Royal Society B: Biological Sciences 2020, 287 (1920), 20192182. https://doi.org/10.1098/rspb.2019.2182.
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Grimm, P.; Combes, S.; Pascal, G.; Cauquil, L.; Julliand, V. Dietary Composition and Yeast/Microalgae Combination Supplementation Modulate the Microbial Ecosystem in the Caecum, Colon and Faeces of Horses. British Journal of Nutrition 2020, 123 (4), 372–382. https://doi.org/10.1017/S0007114519002824.
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Sow, A.; Haran, J.; Benoit, L.; Galan, M.; Brévault, T. DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems. Insects 2020, 11 (5), 294. https://doi.org/10.3390/insects11050294.
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Żarski, D.; Le Cam, A.; Nynca, J.; Klopp, C.; Ciesielski, S.; Sarosiek, B.; Montfort, J.; Król, J.; Fontaine, P.; Ciereszko, A.; Bobe, J. Domestication Modulates the Expression of Genes Involved in Neurogenesis in High‐quality Eggs of Sander Lucioperca. Mol Reprod Dev 2020, 87 (9), 934–951. https://doi.org/10.1002/mrd.23414.
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Paës, C.; Gidenne, T.; Bébin, K.; Duperray, J.; Gohier, C.; Guené-Grand, E.; Rebours, G.; Bouchez, O.; Barilly, C.; Aymard, P.; Combes, S. Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota. Frontiers in Veterinary Science 2020, 7, 261. https://doi.org/10.3389/fvets.2020.00261.
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Garcia-Baccino, C. A.; Lourenco, D. A. L.; Miller, S.; Cantet, R. J. C.; Vitezica, Z. G. Estimating Dominance Genetic Variances for Growth Traits in American Angus Males Using Genomic Models. Journal of Animal Science 2020, 98 (1), skz384. https://doi.org/10.1093/jas/skz384.
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Jallet, A. J.; Le Rouzic, A.; Genissel, A. Evolution and Plasticity of the Transcriptome Under Temperature Fluctuations in the Fungal Plant Pathogen Zymoseptoria Tritici. Frontiers in Microbiology 2020, 11, 2180. https://doi.org/10.3389/fmicb.2020.573829.
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Baksay, S.; Pornon, A.; Burrus, M.; Mariette, J.; Andalo, C.; Escaravage, N. Experimental Quantification of Pollen with DNA Metabarcoding Using ITS1 and TrnL. Scientific Reports 2020, 10 (1), 4202. https://doi.org/10.1038/s41598-020-61198-6.
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Rasplus, J.; Rodriguez, L. J.; Sauné, L.; Peng, Y.; Bain, A.; Kjellberg, F.; Harrison, R. D.; Pereira, R. A. S.; Ubaidillah, R.; Tollon‐Cordet, C.; Gautier, M.; Rossi, J.; Cruaud, A. Exploring Systematic Biases, Rooting Methods and Morphological Evidence to Unravel the Evolutionary History of the Genus Ficus (Moraceae). Cladistics 2020, cla.12443. https://doi.org/10.1111/cla.12443.
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Granado-Tajada, I.; Legarra, A.; Ugarte, E. Exploring the Inclusion of Genomic Information and Metafounders in Latxa Dairy Sheep Genetic Evaluations. Journal of Dairy Science 2020, 103 (7), 6346–6353. https://doi.org/10.3168/jds.2019-18033.
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Magro, A.; Lecompte, E.; Hemptinne, J.-L.; Soares, A. O.; Dutrillaux, A.-M.; Murienne, J.; Fürsch, H.; Dutrillaux, B. First Case of Parthenogenesis in Ladybirds (Coleoptera: Coccinellidae) Suggests New Mechanisms for the Evolution of Asexual Reproduction. Journal of Zoological Systematics and Evolutionary Research 2020, 58 (1), 194–208. https://doi.org/10.1111/jzs.12339.
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Chateigner, A.; Lesage-Descauses, M.-C.; Rogier, O.; Jorge, V.; Leplé, J.-C.; Brunaud, V.; Roux, C. P.-L.; Soubigou-Taconnat, L.; Martin-Magniette, M.-L.; Sanchez, L.; Segura, V. Gene Expression Predictions and Networks in Natural Populations Supports the Omnigenic Theory. BMC Genomics 2020, 21 (1), 416. https://doi.org/10.1186/s12864-020-06809-2.
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Goñi-Urriza, M.; Klopp, C.; Ranchou-Peyruse, M.; Ranchou-Peyruse, A.; Monperrus, M.; Khalfaoui-Hassani, B.; Guyoneaud, R. Genome Insights of Mercury Methylation among Desulfovibrio and Pseudodesulfovibrio Strains. Research in Microbiology 2020, 171 (1), 3–12. https://doi.org/10.1016/j.resmic.2019.10.003.
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Takehana, Y.; Zahm, M.; Cabau, C.; Klopp, C.; Roques, C.; Bouchez, O.; Donnadieu, C.; Barrachina, C.; Journot, L.; Kawaguchi, M.; Yasumasu, S.; Ansai, S.; Naruse, K.; Inoue, K.; Shinzato, C.; Schartl, M.; Guiguen, Y.; Herpin, A. Genome Sequence of the Euryhaline Javafish Medaka, Oryzias Javanicus : A Small Aquarium Fish Model for Studies on Adaptation to Salinity. G3 2020, 10 (3), 907–915. https://doi.org/10.1534/g3.119.400725.
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Phan, N. T.; Orjuela, J.; Danchin, E. G. J.; Klopp, C.; Perfus‐Barbeoch, L.; Kozlowski, D. K.; Koutsovoulos, G. D.; Lopez‐Roques, C.; Bouchez, O.; Zahm, M.; Besnard, G.; Bellafiore, S. Genome Structure and Content of the Rice Root‐knot Nematode ( Meloidogyne Graminicola ). Ecol Evol 2020, 10 (20), 11006–11021. https://doi.org/10.1002/ece3.6680.
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Talouarn, E.; Bardou, P.; Palhière, I.; Oget, C.; Clément, V.; Tosser-Klopp, G.; Rupp, R.; Robert-Granié, C.; The VarGoats Consortium. Genome Wide Association Analysis on Semen Volume and Milk Yield Using Different Strategies of Imputation to Whole Genome Sequence in French Dairy Goats. BMC Genetics 2020, 21 (1), 19. https://doi.org/10.1186/s12863-020-0826-9.
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Ibrahim, H. M. M.; Kusch, S.; Didelon, M.; Raffaele, S. Genome‐wide Alternative Splicing Profiling in the Fungal Plant Pathogen Sclerotinia Sclerotiorum during the Colonization of Diverse Host Families. Mol Plant Pathol 2020, mpp.13006. https://doi.org/10.1111/mpp.13006.
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Willemsen, A.; van den Boom, A.; Dietz, J.; Bilge Dagalp, S.; Dogan, F.; Bravo, I. G.; Ehrhardt, A.; Ehrke-Schulz, E. Genomic and Phylogenetic Characterization of ChPV2, a Novel Goat PV Closely Related to the Xi-PV1 Species Infecting Bovines. Virol J 2020, 17 (1), 167. https://doi.org/10.1186/s12985-020-01440-9.
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Salem, E.; Dhanasekaran, V.; Cassard, H.; Hause, B.; Maman, S.; Meyer, G.; Ducatez, M. F. Global Transmission, Spatial Segregation, and Recombination Determine the Long-Term Evolution and Epidemiology of Bovine Coronaviruses. Viruses 2020, 12 (5), 534. https://doi.org/10.3390/v12050534.
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Beaumont, M.; Paës, C.; Mussard, E.; Knudsen, C.; Cauquil, L.; Aymard, P.; Barilly, C.; Gabinaud, B.; Zemb, O.; Fourre, S.; Gautier, R.; Lencina, C.; Eutamène, H.; Theodorou, V.; Canlet, C.; Combes, S. Gut Microbiota Derived Metabolites Contribute to Intestinal Barrier Maturation at the Suckling-to-Weaning Transition. null 2020, 11 (5), 1268–1286. https://doi.org/10.1080/19490976.2020.1747335.
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Graux, A.-I.; Resmond, R.; Casellas, E.; Delaby, L.; Faverdin, P.; Le Bas, C.; Ripoche, D.; Ruget, F.; Thérond, O.; Vertès, F.; Peyraud, J.-L. High-Resolution Assessment of French Grassland Dry Matter and Nitrogen Yields. European Journal of Agronomy 2020, 112, 125952. https://doi.org/10.1016/j.eja.2019.125952.
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Dussert, Y.; Legrand, L.; Mazet, I. D.; Couture, C.; Piron, M.-C.; Serre, R.-F.; Bouchez, O.; Mestre, P.; Toffolatti, S. L.; Giraud, T.; Delmotte, F. Identification of the First Oomycete Mating-Type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara Viticola. Current Biology 2020, 30 (20), 3897-3907.e4. https://doi.org/10.1016/j.cub.2020.07.057.
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Lorenzi, C.; Barriere, S.; Villemin, J.-P.; Dejardin Bretones, L.; Mancheron, A.; Ritchie, W. IMOKA: K-Mer Based Software to Analyze Large Collections of Sequencing Data. Genome Biol 2020, 21 (1), 261. https://doi.org/10.1186/s13059-020-02165-2.
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Boulesnane, Y.; Leloup, J.; Lerch, T. Z.; Roynette, A.; Pensé-Lhéritier, A.-M.; Mielcarek, C.; Changey, F. Impact of Sampling and DNA Extraction Methods on Skin Microbiota Assessment. Journal of Microbiological Methods 2020, 171, 105880. https://doi.org/10.1016/j.mimet.2020.105880.
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Tournayre, O.; Leuchtmann, M.; Filippi-Codaccioni, O.; Trillat, M.; Piry, S.; Pontier, D.; Charbonnel, N.; Galan, M. In Silico and Empirical Evaluation of Twelve Metabarcoding Primer Sets for Insectivorous Diet Analyses. Ecology and Evolution 2020, 10 (13), 6310–6332. https://doi.org/10.1002/ece3.6362.
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Robic, A.; Demars, J.; Kühn, C. In-Depth Analysis Reveals Production of Circular RNAs from Non-Coding Sequences. Cells 2020, 9 (8), 1806. https://doi.org/10.3390/cells9081806.
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Ploypetch, S.; Roytrakul, S.; Phaonakrop, N.; Kittisenachai, S.; Leetanasaksakul, K.; Pisamai, S.; Kalpravidh, C.; Rungsipipat, A.; Suriyaphol, G. In-Gel Digestion Coupled with Mass Spectrometry (GeLC-MS/MS)-Based Salivary Proteomic Profiling of Canine Oral Tumors. BMC Veterinary Research 2020, 16 (1), 335. https://doi.org/10.1186/s12917-020-02550-w.
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Kottler, V. A.; Feron, R.; Nanda, I.; Klopp, C.; Du, K.; Kneitz, S.; Helmprobst, F.; Lamatsch, D. K.; Lopez-Roques, C.; Lluch, J.; Journot, L.; Parrinello, H.; Guiguen, Y.; Schartl, M. Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species. Genetics 2020, 214 (1), 193–209. https://doi.org/10.1534/genetics.119.302698.
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Salmona, J.; Olofsson, J. K.; Hong-Wa, C.; Razanatsoa, J.; Rakotonasolo, F.; Ralimanana, H.; Randriamboavonjy, T.; Suescun, U.; Vorontsova, M. S.; Besnard, G. Late Miocene Origin and Recent Population Collapse of the Malagasy Savanna Olive Tree (Noronhia Lowryi). Biological Journal of the Linnean Society 2020, 129 (1), 227–243. https://doi.org/10.1093/biolinnean/blz164.
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Sommeria-Klein, G.; Zinger, L.; Coissac, E.; Iribar, A.; Schimann, H.; Taberlet, P.; Chave, J. Latent Dirichlet Allocation Reveals Spatial and Taxonomic Structure in a DNA-Based Census of Soil Biodiversity from a Tropical Forest. Molecular Ecology Resources 2020, 20 (2), 371–386. https://doi.org/10.1111/1755-0998.13109.
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Dubois, C.; Martin, F.; Hassel, C.; Magnier, F.; Daumar, P.; Aubel, C.; Guerder, S.; Mounetou, E.; Penault-Lorca, F.; Bamdad, M. Low-Dose and Long-Term Olaparib Treatment Sensitizes MDA-MB-231 and SUM1315 Triple-Negative Breast Cancers Spheroids to Fractioned Radiotherapy. JCM 2019, 9 (1), 64. https://doi.org/10.3390/jcm9010064.
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Leroy, T.; Rougemont, Q.; Dupouey, J.-L.; Bodénès, C.; Lalanne, C.; Belser, C.; Labadie, K.; Le Provost, G.; Aury, J.-M.; Kremer, A.; Plomion, C. Massive Postglacial Gene Flow between European White Oaks Uncovered Genes Underlying Species Barriers. New Phytol 2020, 226 (4), 1183–1197. https://doi.org/10.1111/nph.16039.
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Orozco-Arias, S.; Piña, J. S.; Tabares-Soto, R.; Castillo-Ossa, L. F.; Guyot, R.; Isaza, G. Measuring Performance Metrics of Machine Learning Algorithms for Detecting and Classifying Transposable Elements. Processes 2020, 8 (6), 638. https://doi.org/10.3390/pr8060638.
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Courtois, P.; Rorat, A.; Lemiere, S.; Guyoneaud, R.; Attard, E.; Longepierre, M.; Rigal, F.; Levard, C.; Chaurand, P.; Grosser, A.; Grobelak, A.; Kacprzak, M.; Lors, C.; Richaume, A.; Vandenbulcke, F. Medium-Term Effects of Ag Supplied Directly or via Sewage Sludge to an Agricultural Soil on Eisenia Fetida Earthworm and Soil Microbial Communities. Chemosphere 2020, 128761. https://doi.org/10.1016/j.chemosphere.2020.128761.
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Aubé, J.; Senin, P.; Bonin, P.; Pringault, O.; Jeziorski, C.; Bouchez, O.; Klopp, C.; Guyoneaud, R.; Goñi-Urriza, M. Meta-Omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning. Microbial Ecology 2020, 80 (2), 286–295. https://doi.org/10.1007/s00248-020-01493-x.
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Bellec, L.; Cambon-Bonavita, M.-A.; Durand, L.; Aube, J.; Gayet, N.; Sandulli, R.; Brandily, C.; Zeppilli, D. Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode. Frontiers in Microbiology 2020, 11, 2023. https://doi.org/10.3389/fmicb.2020.02023.
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Clerissi, C.; de Lorgeril, J.; Petton, B.; Lucasson, A.; Escoubas, J.-M.; Gueguen, Y.; Dégremont, L.; Mitta, G.; Toulza, E. Microbiota Composition and Evenness Predict Survival Rate of Oysters Confronted to Pacific Oyster Mortality Syndrome. Frontiers in Microbiology 2020, 11, 311. https://doi.org/10.3389/fmicb.2020.00311.
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Milet, J.; Courtin, D.; Garcia, A.; Perdry, H. Mixed Logistic Regression in Genome-Wide Association Studies. BMC Bioinformatics 2020, 21 (1), 536. https://doi.org/10.1186/s12859-020-03862-2.
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