Publications 2012

  • Capitan A, Allais-Bonnet A, Pinton A, Marquant-Le Guienne B, Le Bourhis D, Grohs C, et al. (2012) A 3.7 Mb Deletion Encompassing ZEB2 Causes a Novel Polled and Multisystemic Syndrome in the Progeny of a Somatic Mosaic Bull. PLoS ONE 7(11): e49084. doi:10.1371/journal.pone.0049084. see
  • Nizar Fawal, Qiang Li, Bruno Savelli, Marie Brette, Gisele Passaia, Maxime Fabre, Catherine Mathé, Christophe Dunand. PeroxiBase: a database for large-scale evolutionary analysis of peroxidases. Nucleic Acids Res. 2013 January; 41(D1): D441–D444. Published online 2012 November 23. doi: 10.1093/nar/gks1083. see
  • Antoine Kremer, Albert G. Abbott, John E. Carlson, Paul S. Manos, Christophe Plomion, Paul Sisco, Margaret E. Staton, Saneyoshi Ueno, Giovanni G. Vendramin. Genomics of Fagaceae. Tree Genetics & Genomes. June 2012, Volume 8, Issue 3, pp 583-610. see
  • Léni Corrand, Maxence Delverdier, Marie-Noëlle Lucas, Guillaume Croville, Charles Facon, Dominique Balloy, Mariette Ducatez & Jean-Luc Guérin. A low-pathogenic avian influenza H6N1 outbreak in a turkey flock in France: a comprehensive case report. Avian Pathology Volume 41, Issue 6, 2012. see
  • Zened A, Combes S, Cauquil L, Mariette J, Klopp C, Bouchez O, Troegeler-Meynadier A, Enjalbert F. Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. R2. FEMS Microbiol Ecol. 2012 Sep 13. doi:10.1111/1574-6941.12011. see
  • Mariette J, Escudie F, Allias N, Salin G, Noirot C, Thomas S, Klopp C. NG6: Integrated next generation sequencing storage and processing environment. BMC Genomics, 2012 13:462. see
  • Bouétard A, Noirot C, Besnard AL, Bouchez O, Choisne D, Robe E, Klopp C, Lagadic L, Coutellec MA. Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress. Ecotoxicology, 2012. see
  • Croville G, Soubies SM, Barbieri J, Klopp C, Mariette J, Bouchez O, Camus-Bouclainville C, Guerin JL. Field Monitoring of Avian Influenza Viruses: Whole Genome Sequencing and Tracking of Neuraminidase Evolution Using 454 Pyrosequencing. Journal of Clinical Microbiology, 2012. see
  • D. Allouche, S. Traoré, I. André, S. de Givry, G. Katsirelos, S. Barbe, T. Schiex. Computational Protein Design as a Cost Function Network Optimization Problem. CP’2012, Québec, Canada. see
  • Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119. see
  • Alice Aarnink, Pol-André Apoil, Ichiro Takahashi, Naoki Osada and Antoine Blancher. Characterization of MHC class I transcripts of a Malaysian cynomolgus macaque by high-throughput pyrosequencing and EST libraries. Immunogenetics. Volume 1 / 1974 – Volume 64 / 2012. see
  • Amari, Myriam, Sandrine Laguerre, Marlène Vuillemin, Hervé Robert, Valentin Loux, Christophe Klopp, Sandrine Morel, et al. « Genome Sequence of Weissella Confusa LBAE C39-2, Isolated from a Wheat Sourdough ». Journal of Bacteriology 194, no. 6 (mars 15, 2012): 1608-1609. see
  • Laguerre, Sandrine, Myriam Amari, Marlène Vuillemin, Hervé Robert, Valentin Loux, Christophe Klopp, Sandrine Morel, et al. « Genome Sequences of Three Leuconostoc Citreum Strains, LBAE C10, LBAE C11, and LBAE E16, Isolated from Wheat Sourdoughs ». Journal of Bacteriology 194, no. 6 (mars 15, 2012): 1610-1611. see
  • Lieke M. van der Aa, Luc Jouneau, Emmanuel Laplantine, Olivier Bouchez, Lidy Van Kemenade, Pierre Boudinot, FinTRIMs, fish virus-inducible proteins with E3 ubiquitin ligase activity, Developmental & Comparative Immunology, Volume 36, Issue 2, February 2012, Pages 433-441, ISSN 0145-305X, 10.1016/j.dci.2011.08.010. see
  • S. I. Duchemin, C. Colombani, A. Legarra, G. Baloche, H. Larroque, J-M. Astruc, F. Barillet, C. Robert-Granié, and E. Manfredi, 2012. Genomic selection in French Lacaune dairy sheep breed. Journal of Dairy Science, 95:2723-2733.
  • A. Legarra, and V. Ducrocq, 2012. Computational strategies for national integration of phenotypic, genomic and pedigree data in a single-step BLUP. Journal of Dairy Science, 95:4629-4645, featured article.
  • D. L. Roldan, H. Gilbert, J. Henshall., A. Legarra, J.M. Elsen. Fine-mapping quantitative trait loci with a medium-high marker density panel: efficiency of population structures and comparison of linkage disequilibrium linkage analysis models. Genetics Research 94:223-234.
  • G. Sallé, P. Jacquiet, L. Gruner, J. Cortet, C. Sauvé, F. Prévot, C. Grisez, J. P. Bergeaud, L. Schibler, A. Tircazes, D. François, C. Pery, F. Bouvier, J. C. Thouly, J. C. Brunel, A. Legarra, J. M. Elsen, J. Bouix, R. Rupp and C. R. Moreno. A genome scan for QTL affecting resistance to Haemonchus contortus in sheep. Journal of Animal Science, in press, doi: 10.2527/jas.2012-5121.
  • S.I. Duchemin, C. Colombani, A. Legarra, G. Baloche, H. Larroque, J-M. Astruc, F. Barillet, C. Robert-Granié, and E. Manfredi, 2012. Genomic selection in French Lacaune dairy sheep breed. Journal of Dairy Science, 95:2723-2733.
  • L. Frésard, S. Leroux, P. Dehais, B. Servin, H. Gilbert, O. Bouchez, C, Klopp, C. Cabau, F. Vignoles, K. Feve, A. Ricros, D. Gourichon, C. Diot, S. Richard, C. Leterrier, C. Beaumont, A. Vignal, F. Minvielle, F  Pitel: Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics 2012, 13:551, doi:10.1186/1471-2164-13-551. see
  • Dawson HD, Loveland JE, Pascal G, Gilbert JG, Uenishi H, Mann KM, Sang Y, Zhang J, Carvalho-Silva D, Hunt T, Hardy M, Hu Z, Zhao SH, Anselmo A, Shinkai H, Chen C, Badaoui B, Berman D, Amid C, Kay M, Lloyd D, Snow C, Morozumi T, Cheng RP, Bystrom M, Kapetanovic R, Schwartz JC, Kataria R, Astley M, Fritz E, Steward C, Thomas M, Wilming L, Toki D, Archibald AL, Bed’hom B, Beraldi D, Huang TH, Ait-Ali T, Blecha F, Botti S, Freeman TC, Giuffra E, Hume DA, Lunney JK, Murtaugh MP, Reecy JM, Harrow JL, Rogel-Gaillard C, Tuggle CK. Structural and functional annotation of the porcine immunome. BMC Genomics. 2013 May 15;14:332. doi: 10.1186/1471-2164-14-332. see.
  • Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622. see.
  • Meslin C, Mugnier S, Callebaut I, Laurin M, Pascal G, Poupon A, Goudet G, Monget P. Evolution of genes involved in gamete interaction: evidence for positive selection, duplications and losses in vertebrates. PLoS One. 2012;7(9):e44548. doi: 10.1371/journal.pone.0044548. Epub 2012 Sep 5. see.