Publications 2011

  • Mohamad Fawal, Estelle Espinos, Olivier Jean-Jean & Dominique Morello. Looking for the functions of RNA granules in ALK-transformed cells. 2011. BioArchitecture 1:2, pages 91-95. see
  • Vignes M, Vandel J, Allouche D, Ramadan-Alban N, Cierco-Ayrolles C, Schiex T, Mangin B, and de Givry S. Gene regulatory network reconstruction using bayesian networks, the dantzig selector, the lasso and their meta-analysis. PLoS ONE, 6(12), 2011. see
  • Douaud M, Feve K, Pituello F, Gourichon D, Boitard S, et al. 2011 Epilepsy Caused by an Abnormal Alternative Splicing with Dosage Effect of the SV2A Gene in a Chicken Model. PLoS ONE 6(10): e26932. doi:10.1371/journal.pone.0026932;see
  • L. Tusell, A. Legarra, M. García-Tomás, O. Rafel, J. Ramon, and M. Piles. Genetic basis of semen traits and their relationship with growth rate in rabbit. J ANIM SCI November 18, 2011 jas.2011-4165; see
  • Villar E, Klopp C, Noirot C, Novaes E, Kirst M, Plomion C, Gion JM. RNA-Seq
    reveals genotype-specific molecular responses to water deficit in eucalyptus. BMC Genomics. 2011 Nov 2;12(1):538. see
  • Matteo Serino, Elodie Luche, Sandra Gres, Audrey Baylac, Mathieu Bergé, Claire Cenac, Aurelie Waget, Pascale Klopp, Jason Iacovoni, Christophe Klopp, Jerome Mariette, Olivier Bouchez, Jerome Lluch, Francoise Ouarné, Pierre Monsan, Philippe Valet, Christine Roques, Jacques Amar, Anne Bouloumié, Vassilia Théodorou, Remy Burcelin. : Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Gut 2011. gutjnl-2011-301012. see
  • Amar J, Serino M, Lange C, Chabo C, Iacovoni J, Mondot S, Lepage P, Klopp C, Mariette J, Bouchez O, Perez L, Courtney M, Marre M, Klopp P, Lantieri O, Doré J, Charles MA, Balkau B, Burcelin R; for the D.E.S.I.R. Study Group. Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept. Diabetologia. 2011 Oct 6. see
  • Marie-Josée Cros, Antoine de Monte, Jérôme Mariette, Philippe Bardou, Benjamin Grenier-Boley, Daniel Gautheret, Hélène Touzet, and Christine Gaspin. RNAspace.org: an integrated environment for the prediction, annotation and analysis of ncRNA. RNA 2011 17 (11) see
  • J Amar, M Serino, C Lange, C Chabot, O Bouchez, J Mariette, L Perez, M Courntey, M Marre, P Klopp, O Lantieri, J Dore, MA Charles, B Balkau, R Burcelin. Predictive value of blood bacterial DNA on the onset of type 2 diabetes from general population: 7e.11. Journal of Hypertension 29, e116. see
  • Busset J, Cabau C, Meslin C, Pascal G. PhyleasProg: a user-oriented web server for wide evolutionary analyses. Nucleic Acids Res. 2011 Jul;39 (Web Server issue):W479-85 see
  • M Serino, E Luche, P Klopp, C Chabo, O Bouchez, C Klopp, J Mariette, J Lluch, J Iacovoni, St Mondot, P Lepage, J Dore, A Bouloumie, P Valet, R Burcelin. PO35 – Characterization of a microbiota of intestinal origin in white adipose tissue and troma vascular fraction from healthy and patients according to their BMI. Diabetes & Metabolism 37 (1), A32-A32. see
  • J Amar, C Chabo, C Lange, M Serino, J Iacovoni, S Mondo, P Lepage, J Mariette, O Lantieri, L Perez, M Marre, P Klopp, M Courtney, MA Charles, B Balkau, R Burcelin. O85 LA concentration sanguine d’ADN bactérien prédit la survenue du diabète en population générale. Diabetes & Metabolism 37 (1), A21-A21. see
  • Toro MA, Garcia-Cortes LA, Lefarra A. A note on the rationale for estimating genealogical coancestry from molecular markers. Genetics Selection Evolution 2011, 43:27.
  • Vitezica, Z.G., Aguilar I., Misztal, I., Legarra, A., 2011. Bias in genomic predictions for populations under selection. Genet. Res., 93: 357-366.see
  • Tussell L, Legarra A, Garcia-Tomas M, Rafel O, Ramon J, Piles M. Different ways to model biological relationships between fertility and PH of the semen in rabbits. J. Anim. Sci 2011. 89:1294-1303
  • Mariette J, Noirot C, Klopp C. Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool. BMC Research Notes 2011, 4:149. see
  • A. Legarra, F. Calenge, P. Mariani, P. Velge and C. Beaumont. Use of a reduced set of single nucleotide polymorphisms for genetic evaluation of resistance to Salmonella carrier state in laying hens. Poult Sci 2011. 90:731-736. doi:10.3382/ps.2010-01260. see
  • Phok, K, Moisan, A, Rinaldi D, Brucato, N, Carpousis, AJ, Gaspin, C, and Clouet-d’Orval, B. Identification of CRISPR and riboswitch related RNAs among novel non-coding RNAs of the euryarchaeon Pyrococcus abyssi. BMC Genomics 2011, 12:312doi:10.1186/1471-2164-12-312. see
  • Matthias Macé, Stéphane D. Galiacy, Angélique Erraud, José Enrique Mejía, Heather Etchevers, Michèle Allouche, Laurence Desjardins, Patrick Calvas, François Malecaze. Comparative transcriptome and network biology analyses demonstrate antiproliferative and hyperapoptotic phenotypes in human keratoconus corneas. IOVS June 15, 2011 iovs.10-70981. see
  • Saneyoshi Ueno1, Christophe Klopp, Céline Noirot, Valérie Léger, Elodie Prince, Antoine Kremer, Christophe Plomion, Grégoire Le Provost. Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR. BMC Proceedings 2011, 5(Suppl 7):P20. see
  • Alice Aarnink, Pol-André Apoil, Ichiro Takahashi, Naoki Osada and Antoine Blancher. Influence of the MHC genotype on the progression of experimental SIV infection in the Mauritian cynomolgus macaque. Immunogenetics, Volume 23, Number 5, 267-274, DOI:10.1007/s00251-010-0504-6. see
  • Baloche G., Larroque H., Astruc J. M., Babilliot J. M., Boscher M. Y., Boulenc P., Chantry-Darmon C., Boissieu C., Frégeat G., Giral-Viala B., Guibert P., Lagriffoul G., Moreno C., Panis P., Robert-Granié C., Sallé G., Legarra A., Barillet F., 2011. Work in progress on genomic evaluation using BGLUP in French Lacaune dairy sheep breed. 62nd Annual Meeting EAAP, Stavanger, Norvège, 29 Aout – 2 Septembre 2011, Session 49, Theatre 6, Abstract p.345
  • Douaud M., Feve K., Pituello F., Gourichon D., Boitard S., Leguern E., Coquerelle G., Vieaud A., Batini C., Naquet R., Vignal A., Tixier-Boichard M., Pitel F.: Epilepsy Caused by an Abnormal Alternative Splicing with Dosage Effect of the SV2A Gene in a Chicken Model. PLoS One 2011, 6:e26932, doi:10.1371/journal.pone.0026932. see