Publications 2021

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure / Funding / Staff members). All Sigenae’s publications have used the GenoToul Bioinformatics hardware infrastructure.

 
(1) Labussière, E.; Achard, C.; Dubois, S.; Combes, S.; Castex, M.; Renaudeau, D. Saccharomyces Cerevisiae Boulardii CNCM I-1079 Supplementation in Finishing Male Pigs Helps to Cope with Heat Stress through Feeding Behaviour and Gut Microbiota Modulation. Br J Nutr 2021, 1–16. https://doi.org/10.1017/S0007114521001756.
(2) Kuhl, H.; Guiguen, Y.; Höhne, C.; Kreuz, E.; Du, K.; Klopp, C.; Lopez-Roques, C.; Yebra-Pimentel, E. S.; Ciorpac, M.; Gessner, J.; Holostenco, D.; Kleiner, W.; Kohlmann, K.; Lamatsch, D. K.; Prokopov, D.; Bestin, A.; Bonpunt, E.; Debeuf, B.; Haffray, P.; Morvezen, R.; Patrice, P.; Suciu, R.; Dirks, R.; Wuertz, S.; Kloas, W.; Schartl, M.; Stöck, M. A 180 Myr-Old Female-Specific Genome Region in Sturgeon Reveals the Oldest Known Vertebrate Sex Determining System with Undifferentiated Sex Chromosomes. Phil. Trans. R. Soc. B 2021, 376 (1832), 20200089. https://doi.org/10.1098/rstb.2020.0089.
(3) Adolfi, M. C.; Du, K.; Kneitz, S.; Cabau, C.; Zahm, M.; Klopp, C.; Feron, R.; Paixão, R. V.; Varela, E. S.; de Almeida, F. L.; de Oliveira, M. A.; Nóbrega, R. H.; Lopez-Roques, C.; Iampietro, C.; Lluch, J.; Kloas, W.; Wuertz, S.; Schaefer, F.; Stöck, M.; Guiguen, Y.; Schartl, M. A Duplicated Copy of Id2b Is an Unusual Sex-Determining Candidate Gene on the Y Chromosome of Arapaima (Arapaima Gigas). Sci Rep 2021, 11 (1), 21544. https://doi.org/10.1038/s41598-021-01066-z.
(4) Urvois, T.; Perrier, C.; Roques, A.; Sauné, L.; Courtin, C.; Li, Y.; Johnson, A. J.; Hulcr, J.; Auger-Rozenberg, M.-A.; Kerdelhué, C. A First Inference of the Phylogeography of the Worldwide Invader Xylosandrus Compactus. J Pest Sci 2021. https://doi.org/10.1007/s10340-021-01443-7.
(5) Boyrie, L.; Moreau, C.; Frugier, F.; Jacquet, C.; Bonhomme, M. A Linkage Disequilibrium-Based Statistical Test for Genome-Wide Epistatic Selection Scans in Structured Populations. Heredity 2021, 126 (1), 77–91. https://doi.org/10.1038/s41437-020-0349-1.
(6) Beaumont, M.; Lencina, C.; Painteaux, L.; Viémon-Desplanque, J.; Phornlaphat, O.; Lambert, W.; Chalvon-Demersay, T. A Mix of Functional Amino Acids and Grape Polyphenols Promotes the Growth of Piglets, Modulates the Gut Microbiota in Vivo and Regulates Epithelial Homeostasis in Intestinal Organoids. Amino Acids 2021. https://doi.org/10.1007/s00726-021-03082-9.
(7) Tardy, V.; Bonnineau, C.; Bouchez, A.; Miège, C.; Masson, M.; Jeannin, P.; Pesce, S. A Pilot Experiment to Assess the Efficiency of Pharmaceutical Plant Wastewater Treatment and the Decreasing Effluent Toxicity to Periphytic Biofilms. Journal of Hazardous Materials 2021, 411, 125121. https://doi.org/10.1016/j.jhazmat.2021.125121.
(8) Imarazene, B.; Du, K.; Beille, S.; Jouanno, E.; Feron, R.; Pan, Q.; Torres-Paz, J.; Lopez-Roques, C.; Castinel, A.; Gil, L.; Kuchly, C.; Donnadieu, C.; Parrinello, H.; Journot, L.; Cabau, C.; Zahm, M.; Klopp, C.; Pavlica, T.; Al-Rikabi, A.; Liehr, T.; Simanovsky, S. A.; Bohlen, J.; Sember, A.; Perez, J.; Veyrunes, F.; Mueller, T. D.; Postlethwait, J. H.; Schartl, M.; Herpin, A.; Rétaux, S.; Guiguen, Y. A Supernumerary “B-Sex” Chromosome Drives Male Sex Determination in the Pachón Cavefish, Astyanax Mexicanus. Current Biology 2021, 31 (21), 4800-4809.e9. https://doi.org/10.1016/j.cub.2021.08.030.
(9) Barr, C. B.; Cerdan, A.; Clavier, S.; Murienne, J. Amazonopsis Cerdani (Coleoptera: Elmidae: Elminae), a New Species of Riffle Beetle from French Guiana with Habitat Observations. The Coleopterists Bulletin 2021, 75 (2). https://doi.org/10.1649/0010-065X-75.2.427.
(10) Radhakrishnan, G. V.; Keller, J.; Rich, M. K.; Vernié, T.; Mbadinga Mbadinga, D. L.; Vigneron, N.; Cottret, L.; Clemente, H. S.; Libourel, C.; Cheema, J.; Linde, A.-M.; Eklund, D. M.; Cheng, S.; Wong, G. K. S.; Lagercrantz, U.; Li, F.-W.; Oldroyd, G. E. D.; Delaux, P.-M. An Ancestral Signalling Pathway Is Conserved in Intracellular Symbioses-Forming Plant Lineages. Nat. Plants 2020, 6 (3), 280–289. https://doi.org/10.1038/s41477-020-0613-7.
(11) Descoeudres, N.; Jouneau, L.; Henry, C.; Gorrichon, K.; Derré-Bobillot, A.; Serror, P.; Gillespie, L. L.; Archambaud, C.; Pagliuso, A.; Bierne, H. An Immunomodulatory Transcriptional Signature Associated With Persistent Listeria Infection in Hepatocytes. Front. Cell. Infect. Microbiol. 2021, 11, 761945. https://doi.org/10.3389/fcimb.2021.761945.
(12) Dellière, S.; Dannaoui, E.; Fieux, M.; Bonfils, P.; Gricourt, G.; Demontant, V.; Podglajen, I.; Woerther, P.-L.; Angebault, C.; Botterel, F. Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus Fumigatus and Haemophilus Influenza? JoF 2021, 7 (7), 550. https://doi.org/10.3390/jof7070550.
(13) Marie-Etancelin, C.; Tortereau, F.; Gabinaud, B.; Martinez Boggio, G.; Le Graverand, Q.; Marcon, D.; De Almeida, M.-L.; Pascal, G.; Weisbecker, J.-L.; Meynadier, A. Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior. Front. Microbiol. 2021, 12, 759432. https://doi.org/10.3389/fmicb.2021.759432.
(14) Blanc, N.; Frank, X.; Radjai, F.; Mayer-Laigle, C.; Delenne, J.-Y. Breakage of Flawed Particles by Peridynamic Simulations. Comp. Part. Mech. 2021, 8 (5), 1019–1031. https://doi.org/10.1007/s40571-021-00390-5.
(15) Cordaux, R.; Chebbi, M. A.; Giraud, I.; Pleydell, D. R. J.; Peccoud, J. Characterization of a Sex-Determining Region and Its Genomic Context via Statistical Estimates of Haplotype Frequencies in Daughters and Sons Sequenced in Pools. Genome Biology and Evolution 2021, 13 (8), evab121. https://doi.org/10.1093/gbe/evab121.
(16) Lesturgie, P.; Planes, S.; Mona, S. Coalescence Times, Life History Traits and Conservation Concerns: An Example from Four Coastal Shark Species from the Indo-Pacific; preprint; Preprints, 2021. https://doi.org/10.22541/au.161963333.37636342/v2.
(17) Thomy, J.; Sanchez, F.; Gut, M.; Cruz, F.; Alioto, T.; Piganeau, G.; Grimsley, N.; Yau, S. Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus Tauri. Cells 2021, 10 (3), 664. https://doi.org/10.3390/cells10030664.
(18) Policarpo, M.; Fumey, J.; Lafargeas, P.; Naquin, D.; Thermes, C.; Naville, M.; Dechaud, C.; Volff, J.-N.; Cabau, C.; Klopp, C.; Møller, P. R.; Bernatchez, L.; García-Machado, E.; Rétaux, S.; Casane, D. Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals. Molecular Biology and Evolution 2021, 38 (2), 589–605. https://doi.org/10.1093/molbev/msaa249.
(19) Hamard, S.; Céréghino, R.; Barret, M.; Sytiuk, A.; Lara, E.; Dorrepaal, E.; Kardol, P.; Küttim, M.; Lamentowicz, M.; Leflaive, J.; Le Roux, G.; Tuittila, E.; Jassey, V. E. J. Contribution of Microbial Photosynthesis to Peatland Carbon Uptake along a Latitudinal Gradient. J Ecol 2021, 109 (9), 3424–3441. https://doi.org/10.1111/1365-2745.13732.
(20) Robic, A.; Faraut, T.; Feve, K.; Djebali, S.; Prunier, A.; Larzul, C.; Liaubet, L. Correlation Networks Provide New Insights into the Architecture of Testicular Steroid Pathways in Pigs. Genes 2021, 12 (4), 551. https://doi.org/10.3390/genes12040551.
(21) Poelstra, J. W.; Salmona, J.; Tiley, G. P.; Schüßler, D.; Blanco, M. B.; Andriambeloson, J. B.; Bouchez, O.; Campbell, C. R.; Etter, P. D.; Hohenlohe, P. A.; Hunnicutt, K. E.; Iribar, A.; Johnson, E. A.; Kappeler, P. M.; Larsen, P. A.; Manzi, S.; Ralison, J. M.; Randrianambinina, B.; Rasoloarison, R. M.; Rasolofoson, D. W.; Stahlke, A. R.; Weisrock, D. W.; Williams, R. C.; Chikhi, L.; Louis, E. E.; Radespiel, U.; Yoder, A. D. Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. Systematic Biology 2021, 70 (2), 203–218. https://doi.org/10.1093/sysbio/syaa053.
(22) Sanchez, T.; Cury, J.; Charpiat, G.; Jay, F. Deep Learning for Population Size History Inference: Design, Comparison and Combination with Approximate Bayesian Computation. Mol Ecol Resour 2021, 21 (8), 2645–2660. https://doi.org/10.1111/1755-0998.13224.
(23) Garcia-Baccino, C. A.; Marie-Etancelin, C.; Tortereau, F.; Marcon, D.; Weisbecker, J.-L.; Legarra, A. Detection of Unrecorded Environmental Challenges in High-Frequency Recorded Traits, and Genetic Determinism of Resilience to Challenge, with an Application on Feed Intake in Lambs. Genet Sel Evol 2021, 53 (1), 4. https://doi.org/10.1186/s12711-020-00595-x.
(24) Tani, R.; Kawamura, W.; Morita, T.; Klopp, C.; Milhes, M.; Guiguen, Y.; Yoshizaki, G.; Yazawa, R. Development of a Polymerase Chain Reaction (PCR)-Based Genetic Sex Identification Method in the Chub Mackerel Scomber Japonicus and Blue Mackerel S. Australasicus. Fish Sci 2021, 87 (6), 785–793. https://doi.org/10.1007/s12562-021-01548-z.
(25) Bonhomme, M.; Bensmihen, S.; André, O.; Amblard, E.; Garcia, M.; Maillet, F.; Puech-Pagès, V.; Gough, C.; Fort, S.; Cottaz, S.; Bécard, G.; Jacquet, C. Distinct Genetic Basis for Root Responses to Lipo-Chitooligosaccharide Signal Molecules from Different Microbial Origins. Journal of Experimental Botany 2021, 72 (10), 3821–3834. https://doi.org/10.1093/jxb/erab096.
(26) Hardy, A.; Matelot, M.; Touzeau, A.; Klopp, C.; Lopez-Roques, C.; Duharcourt, S.; Defrance, M. DNAModAnnot: A R Toolbox for DNA Modification Filtering and Annotation. Bioinformatics 2021, 37 (17), 2738–2740. https://doi.org/10.1093/bioinformatics/btab032.
(27) Meynadier, A.; Pascal, G.; Kaleem, M.; Farizon, Y.; Cauquil, L.; Combes, S.; Durand, D.; Enjalbert, F. Do Digestive Bacteria Suffer from Oxidative Stress: A Study on Ruminal Bacteria; preprint; In Review, 2021. https://doi.org/10.21203/rs.3.rs-960221/v1.
(28) Hassel, C.; Gausserès, B.; Guzylack-Piriou, L.; Foucras, G. Ductal Macrophages Predominate in the Immune Landscape of the Lactating Mammary Gland. Front. Immunol. 2021, 12, 754661. https://doi.org/10.3389/fimmu.2021.754661.
(29) Grosser, A.; Grobelak, A.; Rorat, A.; Courtois, P.; Vandenbulcke, F.; Lemière, S.; Guyoneaud, R.; Attard, E.; Celary, P. Effects of Silver Nanoparticles on Performance of Anaerobic Digestion of Sewage Sludge and Associated Microbial Communities. Renewable Energy 2021, 171, 1014–1025. https://doi.org/10.1016/j.renene.2021.02.127.
(30) Luz, B. S. R. D.; Nicolas, A.; Chabelskaya, S.; Rodovalho, V. de R.; Le Loir, Y.; Azevedo, V. A. de C.; Felden, B.; Guédon, E. Environmental Plasticity of the RNA Content of Staphylococcus Aureus Extracellular Vesicles. Front. Microbiol. 2021, 12, 634226. https://doi.org/10.3389/fmicb.2021.634226.
(31) Leal, B. S. S.; Chaves, C. J. N.; Graciano, V. A.; Boury, C.; Huacre, L. A. P.; Heuertz, M.; Palma-Silva, C. Evidence of Local Adaptation despite Strong Drift in a Neotropical Patchily Distributed Bromeliad. Heredity 2021, 127 (2), 203–218. https://doi.org/10.1038/s41437-021-00442-9.
(32) Cruaud, A.; Lehrter, V.; Genson, G.; Rasplus, J.-Y.; Depaquit, J. Evolution, Systematics and Historical Biogeography of Sand Flies of the Subgenus Paraphlebotomus (Diptera, Psychodidae, Phlebotomus) Inferred Using Restriction-Site Associated DNA Markers. PLoS Negl Trop Dis 2021, 15 (7), e0009479. https://doi.org/10.1371/journal.pntd.0009479.
(33) Benites, L. F.; Bucchini, F.; Sanchez-Brosseau, S.; Grimsley, N.; Vandepoele, K.; Piganeau, G. Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. Genome Biology and Evolution 2021, 13 (10), evab216. https://doi.org/10.1093/gbe/evab216.
(34) Rasplus, J.; Rodriguez, L. J.; Sauné, L.; Peng, Y.; Bain, A.; Kjellberg, F.; Harrison, R. D.; Pereira, R. A. S.; Ubaidillah, R.; Tollon‐Cordet, C.; Gautier, M.; Rossi, J.; Cruaud, A. Exploring Systematic Biases, Rooting Methods and Morphological Evidence to Unravel the Evolutionary History of the Genus Ficus (Moraceae). Cladistics 2021, 37 (4), 402–422. https://doi.org/10.1111/cla.12443.
(35) Piles, M.; Bergsma, R.; Gianola, D.; Gilbert, H.; Tusell, L. Feature Selection Stability and Accuracy of Prediction Models for Genomic Prediction of Residual Feed Intake in Pigs Using Machine Learning. Front. Genet. 2021, 12, 611506. https://doi.org/10.3389/fgene.2021.611506.
(36) Liang, P.; Schmitz, C.; Lace, B.; Ditengou, F. A.; Su, C.; Schulze, E.; Knerr, J.; Grosse, R.; Keller, J.; Libourel, C.; Delaux, P.-M.; Ott, T. Formin-Mediated Bridging of Cell Wall, Plasma Membrane, and Cytoskeleton in Symbiotic Infections of Medicago Truncatula. Current Biology 2021, 31 (12), 2712-2719.e5. https://doi.org/10.1016/j.cub.2021.04.002.
(37) Bernard, M.; Rué, O.; Mariadassou, M.; Pascal, G. FROGS: A Powerful Tool to Analyse the Diversity of Fungi with Special Management of Internal Transcribed Spacers. Briefings in Bioinformatics 2021, 22 (6), bbab318. https://doi.org/10.1093/bib/bbab318.
(38) Quilbé, J.; Lamy, L.; Brottier, L.; Leleux, P.; Fardoux, J.; Rivallan, R.; Benichou, T.; Guyonnet, R.; Becana, M.; Villar, I.; Garsmeur, O.; Hufnagel, B.; Delteil, A.; Gully, D.; Chaintreuil, C.; Pervent, M.; Cartieaux, F.; Bourge, M.; Valentin, N.; Martin, G.; Fontaine, L.; Droc, G.; Dereeper, A.; Farmer, A.; Libourel, C.; Nouwen, N.; Gressent, F.; Mournet, P.; D’Hont, A.; Giraud, E.; Klopp, C.; Arrighi, J.-F. Genetics of Nodulation in Aeschynomene Evenia Uncovers Mechanisms of the Rhizobium–Legume Symbiosis. Nat Commun 2021, 12 (1), 829. https://doi.org/10.1038/s41467-021-21094-7.
(39) Ma, Y.; Svanella-Dumas, L.; Julian, C.; Galzi, S.; Fernandez, E.; Yvon, M.; Pirolles, E.; Lefebvre, M.; Filloux, D.; Roumagnac, P.; Candresse, T. Genome Characterization and Diversity of Trifolium Virus 1: Identification of a Novel Legume-Infecting Capulavirus. Arch Virol 2021, 166 (9), 2573–2578. https://doi.org/10.1007/s00705-021-05135-6.
(40) García-Galán, A.; Baranowski, E.; Hygonenq, M.-C.; Walch, M.; Croville, G.; Citti, C.; De la Fe, C.; Nouvel, L.-X. Genome Mosaicism in Field Strains of Mycoplasma Bovis as Footprints of in-Host Horizontal Chromosomal Transfer. Appl Environ Microbiol 2021, AEM.01661-21. https://doi.org/10.1128/AEM.01661-21.
(41) Raimondeau, P.; Manzi, S.; Brucato, N.; Kinipi, C.; Leavesley, M.; Ricaut, F.-X.; Besnard, G. Genome Skims Analysis of Betel Palms (Areca Spp., Arecaceae) and Development of a Profiling Method to Assess Their Plastome Diversity. Gene 2021, 800, 145845. https://doi.org/10.1016/j.gene.2021.145845.
(42) Ibrahim, H. M. M.; Kusch, S.; Didelon, M.; Raffaele, S. Genome‐wide Alternative Splicing Profiling in the Fungal Plant Pathogen Sclerotinia Sclerotiorum during the Colonization of Diverse Host Families. Mol. Plant Pathol. 2021, 22 (1), 31–47. https://doi.org/10.1111/mpp.13006.
(43) Brousseau, L.; Fine, P. V. A.; Dreyer, E.; Vendramin, G. G.; Scotti, I. Genomic and Phenotypic Divergence Unveil Microgeographic Adaptation in the Amazonian Hyperdominant Tree Eperua Falcata Aubl. (Fabaceae). Mol Ecol 2021, 30 (5), 1136–1154. https://doi.org/10.1111/mec.15595.
(44) Ledoux, J.; Ghanem, R.; Horaud, M.; López‐Sendino, P.; Romero‐Soriano, V.; Antunes, A.; Bensoussan, N.; Gómez‐Gras, D.; Linares, C.; Machordom, A.; Ocaña, O.; Templado, J.; Leblois, R.; Ben Souissi, J.; Garrabou, J. Gradients of Genetic Diversity and Differentiation across the Distribution Range of a Mediterranean Coral: Patterns, Processes and Conservation Implications. Divers Distrib 2021, 27 (11), 2104–2123. https://doi.org/10.1111/ddi.13382.
(45) Evariste, L.; Braylé, P.; Mouchet, F.; Silvestre, J.; Gauthier, L.; Flahaut, E.; Pinelli, E.; Barret, M. Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity. Front. Microbiol. 2021, 12, 623853. https://doi.org/10.3389/fmicb.2021.623853.
(46) Virgoulay, T.; Rousset, F.; Noûs, C.; Leblois, R. GSpace: An Exact Coalescence Simulator of Recombining Genomes under Isolation by Distance. Bioinformatics 2021, 37 (20), 3673–3675. https://doi.org/10.1093/bioinformatics/btab261.
(47) Ruffini, M.; Vucinic, J.; de Givry, S. de; Katsirelos, G.; Barbe, S.; Schiex, T. Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms 2021, 14 (6), 168. https://doi.org/10.3390/a14060168.
(48) Fagny, M.; Kuijjer, M. L.; Stam, M.; Joets, J.; Turc, O.; Rozière, J.; Pateyron, S.; Venon, A.; Vitte, C. Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. Front. Genet. 2021, 11, 606285. https://doi.org/10.3389/fgene.2020.606285.
(49) Guichard, M.; Dainat, B.; Eynard, S.; Vignal, A.; Servin, B.; the Beestrong Consortium; Neuditschko, M. Identification of Quantitative Trait Loci Associated with Calmness and Gentleness in Honey Bees Using Whole‐genome Sequences. Anim Genet 2021, 52 (4), 472–481. https://doi.org/10.1111/age.13070.
(50) Teixeira, H.; Salmona, J.; Arredondo, A.; Mourato, B.; Manzi, S.; Rakotondravony, R.; Mazet, O.; Chikhi, L.; Metzger, J.; Radespiel, U. Impact of Model Assumptions on Demographic Inferences: The Case Study of Two Sympatric Mouse Lemurs in Northwestern Madagascar. BMC Ecol Evo 2021, 21 (1), 197. https://doi.org/10.1186/s12862-021-01929-z.
(51) Orozco-Arias, S.; Jaimes, P. A.; Candamil, M. S.; Jiménez-Varón, C. F.; Tabares-Soto, R.; Isaza, G.; Guyot, R. InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning. Genes 2021, 12 (2), 190. https://doi.org/10.3390/genes12020190.
(52) Auvray, F.; Perrat, A.; Arimizu, Y.; Chagneau, C. V.; Bossuet-Greif, N.; Massip, C.; Brugère, H.; Nougayrède, J.-P.; Hayashi, T.; Branchu, P.; Ogura, Y.; Oswald, E. Insights into the Acquisition of the Pks Island and Production of Colibactin in the Escherichia Coli Population. Microbial Genomics 2021, 7 (5). https://doi.org/10.1099/mgen.0.000579.
(53) Leroy, T.; Rougemont, Q. Introduction to Population Genomics Methods. In Molecular Plant Taxonomy; Besse, P., Ed.; Methods in Molecular Biology; Springer US: New York, NY, 2021; Vol. 2222, pp 287–324. https://doi.org/10.1007/978-1-0716-0997-2_16.
(54) Leroy, T.; Rousselle, M.; Tilak, M.-K.; Caizergues, A. E.; Scornavacca, C.; Recuerda, M.; Fuchs, J.; Illera, J. C.; De Swardt, D. H.; Blanco, G.; Thébaud, C.; Milá, B.; Nabholz, B. Island Songbirds as Windows into Evolution in Small Populations. Current Biology 2021, 31 (6), 1303-1310.e4. https://doi.org/10.1016/j.cub.2020.12.040.
(55) Rodríguez-Ramilo, S. T.; Reverter, A.; Legarra, A. Islands of Runs of Homozygosity Indicate Selection Signatures in Ovis Aries 6 (OAR6) of French Dairy Sheep. JDS Communications 2021, 2 (3), 132–136. https://doi.org/10.3168/jdsc.2020-0011.
(56) Lefort, G.; Liaubet, L.; Marty-Gasset, N.; Canlet, C.; Vialaneix, N.; Servien, R. Joint Automatic Metabolite Identification and Quantification of a Set of 1 H NMR Spectra. Anal. Chem. 2021, 93 (5), 2861–2870. https://doi.org/10.1021/acs.analchem.0c04232.
(57) Mariette, J.; Olteanu, M.; Vialaneix, N. Kernel and Dissimilarity Methods for Exploratory Analysis in a Social Context. In Advances in Contemporary Statistics and Econometrics; Daouia, A., Ruiz-Gazen, A., Eds.; Springer International Publishing: Cham, 2021; pp 669–690. https://doi.org/10.1007/978-3-030-73249-3_34.
(58) Payton, L.; Hüppe, L.; Noirot, C.; Hoede, C.; Last, K.; Wilcockson, D.; Ershova, E.; Valière, S.; Meyer, B. L’horloge circadienne et les rythmes transcriptomiques chez une espèce zooplanctonique clé pendant le jour polaire Arctique. Médecine du Sommeil 2021, 18 (4), 192–193. https://doi.org/10.1016/j.msom.2021.10.020.
(59) Rich, M. K.; Vigneron, N.; Libourel, C.; Keller, J.; Xue, L.; Hajheidari, M.; Radhakrishnan, G. V.; Le Ru, A.; Diop, S. I.; Potente, G.; Conti, E.; Duijsings, D.; Batut, A.; Le Faouder, P.; Kodama, K.; Kyozuka, J.; Sallet, E.; Bécard, G.; Rodriguez-Franco, M.; Ott, T.; Bertrand-Michel, J.; Oldroyd, G. E. D.; Szövényi, P.; Bucher, M.; Delaux, P.-M. Lipid Exchanges Drove the Evolution of Mutualism during Plant Terrestrialization. Science 2021, 372 (6544), 864–868. https://doi.org/10.1126/science.abg0929.
(60) Marti-Marimon, M.; Vialaneix, N.; Lahbib-Mansais, Y.; Zytnicki, M.; Camut, S.; Robelin, D.; Yerle-Bouissou, M.; Foissac, S. Major Reorganization of Chromosome Conformation During Muscle Development in Pig. Front. Genet. 2021, 12, 748239. https://doi.org/10.3389/fgene.2021.748239.
(61) Mulero, S.; Toulza, E.; Loisier, A.; Zimmerman, M.; Allienne, J.-F.; Foata, J.; Quilichini, Y.; Pointier, J.-P.; Rey, O.; Boissier, J. Malacological Survey in a Bottle of Water: A Comparative Study between Manual Sampling and Environmental DNA Metabarcoding Approaches. Global Ecology and Conservation 2021, 25, e01428. https://doi.org/10.1016/j.gecco.2020.e01428.
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(63) Pocheron, A.-L.; Le Dréan, G.; Billard, H.; Moyon, T.; Pagniez, A.; Heberden, C.; Le Chatelier, E.; Darmaun, D.; Michel, C.; Parnet, P. Maternal Microbiota Transfer Programs Offspring Eating Behavior. Front. Microbiol. 2021, 12, 672224. https://doi.org/10.3389/fmicb.2021.672224.
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